Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F2 I0 R1
|
181 |
7914.3 |
8336376 |
98.4% |
8202993 |
136.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,357,324 |
A→C |
18.6% |
N37T (AAC→ACC) |
dcrB → |
phage sensitivity protein DcrB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,357,324 | 0 | A | C | 18.6%
| 245.1
/ 18.3
| 162 | N37T (AAC→ACC) | dcrB | phage sensitivity protein DcrB |
| Reads supporting (aligned to +/- strand): ref base A (77/51); new base C (2/32); total (79/83) |
| Fisher's exact test for biased strand distribution p-value = 3.30e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 163 total aligned reads displayed.
ATGGCCGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAAAG > NZ_CP022686/2357187‑2357461
|
ttGGCCGTTTATCGAAAGGATTATGTCAATGCGCATTGTGTTTAAATATGGCGGATTTGGCCGGCTGGTTATGGGGCTTGCGGCCTGGGATGATAAAGACCCTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGAAAcg < 6:278912/139‑1 (MQ=255)
ggCCGTTTATCGAATGGAATAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCGGGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCTGGGTTCGGGCGCATAAAGTAAcgcg < 2:1030555/140‑1 (MQ=255)
gCCGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGa > 8:497439/1‑140 (MQ=255)
gCCGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGGGATGATATAGCCACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGa > 8:492778/1‑140 (MQ=255)
ttATCGAAAGGAATAAGTCAAGGCGCAATCTGGATAAATATGCCGTAATGGGCCTGCGGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGGTCGGGCGCATAAAGAACCGCGACCggg < 6:868826/140‑1 (MQ=255)
ttATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTACCGCGACCggg > 2:490194/1‑140 (MQ=255)
ttATCGAAAGGAAGAAGGCAATGCGCAATCTGCTTAAATATGTCGGAATTGGCCTGCTGTTTATGGGGCTTGCGGCCTGGGATGATAAAGACACTAACGCTATGGCGCAGGGTTCTGTCGCATAAAGTAACGCGACCggg > 2:250508/1‑140 (MQ=255)
tGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGAt > 8:651507/1‑140 (MQ=255)
tGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGAt > 7:248673/1‑140 (MQ=255)
cAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCa > 6:787109/1‑140 (MQ=255)
aaTCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCaa > 1:673933/1‑140 (MQ=255)
tatGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTtctc > 3:319613/1‑140 (MQ=255)
tatGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTtctc > 2:990934/1‑140 (MQ=255)
ggcgtaaTTGGCCTGGTGGTTTGGGGGATTGCGCCCTGTCATTATAAACACACTAACGATATGGCGCAGGGTGCGGCCGAAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCt < 4:536874/135‑1 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTCACGCGACCGGGAAGCCCGTCAACCTGCTGGAGGGCAAGTTAAGTTTCTCGCTg > 1:334096/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGCCCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 2:160511/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCACCCTGCTTGCTGGCAAGTTAAGTTTCTCGCTg > 8:270692/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 8:181384/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 7:135190/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 6:568029/1‑140 (MQ=255)
tatttGGCCGGGTGGTTGTGGGGCGTGCGGCCTGGAATCCTAAACCCACTAACGCTCTGGCGCTGGGTGCGGCCGCACAAACAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 1:17288/137‑1 (MQ=255)
taaTTGGCTTGCTGTTTAGGGGGCTTGCGGCGGGTTATGATAAAGCCACTAACGCTATGGCGCCGGGTTCGGTCCCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 1:630291/139‑1 (MQ=255)
taaTTGGCCTGGTGGTTTGGGGGCTGGCGGCCGGTTATTATAACGAATCAAACGCTTTGGCGCTGGGTTCGGTCGCAGAATTTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 8:974754/139‑1 (MQ=255)
taaTTGGCCCGCGGGTTTTGGGGCTTGCGGCCGGTTATGATAAACACCATACCGCTCTGGCGCAGGGGGCGGGCGCAGAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 5:864281/139‑1 (MQ=255)
taaTCGGCCTGCTGGTTGTGGGGCTGCCGGCCTGTGTTGATAAAGACACTACGGCTCTGGGGCTGGGGTGGGGCGATTAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 4:166354/139‑1 (MQ=255)
gAATTGCCCTGCTGGTTATGGGGCTTGCGGCCTGTTCTGATAAACACACTAACGCTATGGCGCTGGGTTCGGACTCATAAATTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 4:78140/140‑1 (MQ=255)
ctaTTGGGCTGCTGGTTCGGGGGCGGGCGGCCTGTTATGATAACGTCACAAACGCTATGGCGCCGGGTGCGGCCGCTGAAAGTCACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 4:690312/138‑1 (MQ=255)
catgggcccTGCTGGTTTTGGGGCGTGCGGGCTGTGATTTTAACGACCCTACCCATATGGCGCGGGGTTCGGCCGCATAAAGTAACGCGACCGGGAATCCCGTCAAGCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 5:477087/133‑1 (MQ=255)
gCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGCAAGTACCGCGCCCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGat > 3:247631/1‑140 (MQ=255)
gCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCAAGCGGat > 4:467290/1‑140 (MQ=255)
gctgGTTCGGGGGCTGGCGGCCTGGTATCATAACCACACTACCGCTATGGCGCCGGGTCCGGGCGCACAAAGACACGCGACCGGGAATCCCGGCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATga < 7:583907/140‑1 (MQ=255)
gctgGTTAGGGGGCTTGCGGCCGGTGATGATAAACACACTACCGCTATGGCGCAGGGTTCGGTCGCAGAAATTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATga < 2:233286/140‑1 (MQ=255)
gctgGTTAGGGGGCTTGCGGCCGGTGAGGAAAACGCCACTAACGCTATGGCGCCGGGTTCGGTCGCAGAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATga < 6:23065/140‑1 (MQ=255)
ctgGTTATGGGGCTTGCGGCCTGTGATGATAAAGACCCAAAAGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAAGACCGTCACCCTGCTTTATGGCACGTTAAGTGTCTCCCTGCCAGCCGATATgac > 2:608647/1‑140 (MQ=255)
ctgGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTAGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATgac > 7:974754/1‑140 (MQ=255)
ctgGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCCGTCGCAGAAACTAACGCGACCGGGAAGCCCGTCAACCTGCTTGATGGCAAGATAAGTATCTCGCTGCAAGCGGATAAgac > 6:939050/1‑140 (MQ=255)
tgGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATgacc < 4:934731/140‑1 (MQ=255)
ttATGTGGTTTGCGGCTTGTGAGGATTAATAACCTATCGGTTTGGCTCTGGGTGCGGTCCCTTAAAGTAACGCGACCGGGAATCCCGTCAACCTTCTTGAGGGCAAGTTAAGTTTCTCTCTGCCAGCGGATATgaccgac < 4:609778/140‑1 (MQ=255)
tATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGTCAAGTTAAGTTTCTCGCTGCCAGCGGATATgaccgacc > 1:332488/1‑140 (MQ=255)
tgggggCTTGCGGCCTGTGATGATAAAGACACTAACGCTAGGGCGCTGGGTGCGGTCGCAGAACGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCa < 2:733673/138‑1 (MQ=255)
ggggggCTGGCGGCTTGGGTTGAAAACGCCTCTAACGCTATGGCGCCGGGTGCGGGGGGCTAACGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCa < 1:652077/138‑1 (MQ=255)
ggCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCATCGGATATGACCGACCAGAGc > 8:704151/1‑140 (MQ=255)
cTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCgg > 7:209639/1‑140 (MQ=255)
ttGCGGCCTGTTATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGACAGCGGATATGACCGACCAGAGCGGt < 4:770309/140‑1 (MQ=255)
ttGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt > 3:758373/1‑140 (MQ=255)
ttGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt > 2:64960/1‑140 (MQ=255)
ttGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt > 5:702854/1‑140 (MQ=255)
tGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCACCCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGCTa > 8:32034/1‑140 (MQ=255)
tGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTa > 8:284497/1‑140 (MQ=255)
cggtgATGATAACGACACTAACCCTATGGCGCAGGGTGCGGTCGCATAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTgg < 8:640544/138‑1 (MQ=255)
tgtgATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa > 7:581903/1‑108 (MQ=255)
gtgATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGa > 7:42828/1‑140 (MQ=255)
tgatgaTAAAGACACTAACGCTATGGCGCAGGTTTCGGTCGCAGAAAGTAACTCTCCCGGGAATCCCGTCACCCTGCTTGATTTCAAGTTAAGTTACTAGCTGCCAGCTGATATGAACGACCAGAGAGGTAAGCTGGGaa > 1:250854/1‑140 (MQ=255)
cacaaaaaGACACTACCCCTCTGCCCCAGGGTCCGGTCGCCTAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCGGCCAGCGGATATGCCCGACCAGAGCGGTAAGCTGGGAACg < 5:961178/135‑1 (MQ=255)
atgaaAAACACAATACCGCTTTGGCGCAGGGTGCGGGCGAACAACGAACCGCGACCGGGAATCCCGGCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACg < 5:353331/140‑1 (MQ=255)
tataaccacaaTAACGCTAGGGCGCAGGGGTCGGTCGCATAAATTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGGTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCa < 3:792187/133‑1 (MQ=255)
aaaacgACACTAACGCTAGGGCGCAGGGTTCGGCCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAg < 8:264873/135‑1 (MQ=255)
aaGACTCAAACGCTTTGGCGCAGGGCTCGGTCGCACAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGcc < 8:316110/140‑1 (MQ=255)
gACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCaa > 5:588783/1‑140 (MQ=255)
acacTAACGCTATGGCGCTGGGTGCGGTCGCATAAATTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAAt < 7:736734/140‑1 (MQ=255)
cccTAACGCTTTGGCGCAGGGTTGGGTCGCACAACTTAACGCGACCGGGAATCCCGTCAACCTGCTTGTTGGCAAGTTAAGTTTCTCGCTGCGAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATa < 8:857385/138‑1 (MQ=255)
cccTAACGATATGGCGCAGGGTGCGGGCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATa < 2:1043352/138‑1 (MQ=255)
acaaccGCTATGGCGCTGGTTTCGGTCGCAGAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATaa < 6:805468/135‑1 (MQ=255)
tAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACTCGACCGGGAATCCCTTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGCCCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAca > 3:357659/1‑140 (MQ=255)
tAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAca > 1:279044/1‑140 (MQ=255)
tAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAca > 3:531839/1‑140 (MQ=255)
tAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACAGGGAATCCAGTCAACCTGCAAGATGGCAAGTTAAGTTTCACGCAGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGCGAACGCAGGCCAATAAca > 7:606900/1‑140 (MQ=255)
ccGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 2:988269/139‑1 (MQ=255)
acccTAGGGCGCCGGGGGCGGTCGCACAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 4:115996/137‑1 (MQ=255)
aCGCTATGGCGCAGGGTTCTGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAACTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGAGCTAAGCTGGGAACGCAGGCCAATAAcatg > 3:1039439/1‑140 (MQ=255)
aCGCTATGGCGCAGGGTGCGGTCGCAGAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 2:943862/140‑1 (MQ=255)
cgatATGGCGCCGGGGTCGGGCGCAGAAAGTCCCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatgc < 7:497377/137‑1 (MQ=255)
cGCTAGGGCGCAGGGTGCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatgc < 1:561120/140‑1 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAGAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCt > 5:746911/1‑79 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGACAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCt < 6:746911/79‑1 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTc > 6:296672/1‑140 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAAACTGATTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTACGCTGGGAACGCAGGCCAATAACATGCATGTc > 3:231935/1‑140 (MQ=255)
cAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTc > 8:868541/1‑140 (MQ=255)
aGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTcc > 8:852724/1‑140 (MQ=255)
aGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCACGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTcc > 6:704956/1‑140 (MQ=255)
ggTTCGGTCGCATAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGa < 4:130241/140‑1 (MQ=255)
ggTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGAGGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCgc > 4:726903/1‑139 (MQ=255)
tgcGGGCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACg < 4:864996/138‑1 (MQ=255)
cGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTACGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGACCGCAGGCCAATAACATGCATGTCTGGTCCgccgcc > 5:597471/1‑140 (MQ=255)
ggccGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCca < 5:663954/137‑1 (MQ=255)
ggTCTCAGAAATTCCCGCGAACGGGAATCCCGTCAACCTGCTTGATGGAAATTTAAGTTGATCTATGCCAGCGGATATGACCGACCAGAGCGGTAAGATGGGAAAGCAGGCAAATAACATGCATGGCTGGTCCGACGCca < 4:357659/140‑1 (MQ=255)
ggTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGccc > 4:61983/1‑139 (MQ=255)
ggcccacaaaGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGAGATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCcac < 5:215365/133‑1 (MQ=255)
tCGCAGAACTTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCcaca < 1:1050382/140‑1 (MQ=255)
tCGCAGAAATTACCGCTACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGTTATGACCTACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCcaca < 1:45771/140‑1 (MQ=255)
tCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCcaca < 4:343851/140‑1 (MQ=255)
tCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCcaca < 4:248312/140‑1 (MQ=255)
ccgaataaaGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGGTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTTAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCcaca < 3:932845/134‑1 (MQ=255)
ctgAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGCCGCCACAggg > 7:805462/3‑140 (MQ=255)
cAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGCCCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGCCGCCACAggg > 6:533122/1‑140 (MQ=255)
cAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAggg > 7:985404/1‑140 (MQ=255)
cAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGAGATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATACCATGCAGGTCTGGTCCGACGCCACAggg > 1:1080326/1‑140 (MQ=255)
aaaaTTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCa < 2:54858/139‑1 (MQ=255)
aGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGaa < 7:812000/140‑1 (MQ=255)
aaaCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAAAg < 1:651874/139‑1 (MQ=255)
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ATGGCCGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAAAG > NZ_CP022686/2357187‑2357461
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
