Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F2 I0 R1
|
181 |
7914.3 |
8336376 |
98.4% |
8202993 |
136.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,394,287 |
T→G |
19.7% |
N115T (AAC→ACC) |
chuS ← |
hematinate‑forming heme oxygenase ChuS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,394,287 | 0 | T | G | 19.7%
| 359.2
/ 27.6
| 235 | N115T (AAC→ACC) | chuS | hematinate‑forming heme oxygenase ChuS |
| Reads supporting (aligned to +/- strand): ref base T (76/107); new base G (50/2); total (126/109) |
| Fisher's exact test for biased strand distribution p-value = 5.03e-14 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 240 total aligned reads displayed.
CGTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTA > NZ_CP022686/2394148‑2394423
|
cgTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCgtgt < 4:818153/140‑1 (MQ=255)
cATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTg < 1:999604/140‑1 (MQ=255)
cATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCCGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTg < 6:34323/140‑1 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATTCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCCCCCTGATGATCAAATAAATGAATACTCTGGCGTTCGCCACGAGCCGTCTTTTGTTTGa > 6:226215/1‑140 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTgt > 4:1023312/1‑139 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGa > 4:113788/1‑140 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTtttttttt > 1:1012485/1‑138 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAt < 5:728548/140‑1 (MQ=255)
tCGGTGATAAACCGAGCCAGAAGCTCACTCCATGCCGCCATATCTGTAATGTCGGTGGCATAAACTTATAGTAATGAATCGCCCTGATGATCAGAGAACTGAATCCTCTGGCGTGCGCCACGCACCGTGTGTTTTTTGag > 7:632911/1‑139 (MQ=255)
tGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGACTACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGTgg > 8:74901/1‑140 (MQ=255)
gATAACCCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTCCTGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGGGGa < 4:5211/140‑1 (MQ=255)
gATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGa < 5:346668/140‑1 (MQ=255)
gATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGa < 5:966308/140‑1 (MQ=255)
aTAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTtgttgttgta > 5:106946/1‑136 (MQ=255)
aaCCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTAGTTTATGTGGaaaca > 2:821568/1‑138 (MQ=255)
aCCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGATTTGGgaaaaa > 5:606330/1‑138 (MQ=255)
aCCGGGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAaca < 1:239592/140‑1 (MQ=255)
cGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACt < 6:628218/140‑1 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCTTAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGATGAAATCACTgg > 7:942040/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGCTCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGGTTTGGTTGATTTGGAATACACTgg > 8:592305/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAATGCACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGTTTTGGTTAacagatg > 5:460064/1‑136 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCTCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTgg > 8:241676/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGGTTTCATTGATGTGGAAAACACTgg > 4:621637/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTgg < 6:472919/140‑1 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTgg > 8:810069/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAAACTgg > 3:754116/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGTTGTGGAAAACACAgg > 6:54315/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCAATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTAGTTTATGTTGataaaaattg > 3:171581/1‑134 (MQ=255)
tGCCAGAAGCTCACTCCATGCCACCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGTTGTGGGAAACACAgg > 4:153574/1‑140 (MQ=255)
cctgAAGCTCACTCCATGCCGCCATATCGGTTTAGTCGTTGTCATAAACTTTTAGTTATGCATCGCCTTGATGATCAAAGTACTGAATACTCAGGGGTTCGCCTCGAGCGGTGTTTTCTTAGATGTGGAAATCACTGGcc < 3:334813/137‑1 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATATTCTGGCGTTCGCCACGAGCCGTGGGTTGTGTGATGTGGGAAACACTGGcc > 7:566643/1‑140 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGTTGTGGGAAACACTgggc > 1:496497/1‑138 (MQ=255)
cACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGTTCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTATTTGATTTGGAAAACCAAGGCCCagtgattg > 6:417049/1‑140 (MQ=255)
tCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTTTTTGATGTGGAAAAAACTGGCCCCAGGATTgagt > 1:803137/1‑139 (MQ=255)
aTGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAAc < 8:371643/140‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGTTTTCTTTTATGTGGAAAACACTGGCCCATTGATTTAGaaaaa > 4:540176/1‑138 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGTTTTATTTTTTTTGGAAAACCCATGCCCATTTATTGAGAAACa > 2:1047089/1‑140 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGGTTTCAGAGAATTGGAAAACACTGGCCAAATGATTGTGaaaac > 4:417450/1‑138 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTTTTTGATGTGGAAAACACTGGGCCATTGATTTAGAAAcc > 5:204380/1‑139 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTTATTGAGAAACa > 4:954270/1‑140 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTATTTGATGTGGAAAACACAGGCCCATTGATTGAGAAACa > 7:908340/1‑140 (MQ=255)
tGCCGCCATATCGGAATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGGTTCATTGATATGGACAACAAAGGCCCATAGATATAGaaaaa > 7:389202/1‑138 (MQ=255)
gccgccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAaca < 1:827389/117‑1 (MQ=255)
gccgccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAaca > 2:827389/1‑117 (MQ=255)
ccgccATATCGGTATTGTCTGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGTAAAACACTGGCCCATTGATTGAGAAACAGa < 2:328193/140‑1 (MQ=255)
ccgccATATCGGTATTGTCGGTTGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGa < 3:140957/140‑1 (MQ=255)
gccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAATAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACg < 3:479740/140‑1 (MQ=255)
gccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGTTGTTGCAAACACGGGCCCCATGATTGGGCAacacacc > 3:882015/1‑139 (MQ=255)
tatCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTTTTGTGGTAAACACTGGCCCCTTGATTGAGAAACAGACGTaaa > 4:233071/1‑140 (MQ=255)
aTTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGAGCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAgcg < 4:432784/140‑1 (MQ=255)
ttCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTGCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGA‑TGAGAAACAGACGTAAATCCAgcgcgcg < 3:621637/139‑1 (MQ=255)
tCGGTTGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAgcgcgcg < 6:100146/140‑1 (MQ=255)
tCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGATGTGGAAAACACAGGCCCATTGATTGAGAACAAGTCGTAAATCCAgcgcccg > 6:939613/1‑140 (MQ=255)
ggTGGCATTAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTTTTGTGGGAAACACAGGCCCATTGATTGTGAAACAGTACTTAATGCAGcgcccgcg > 7:469953/1‑140 (MQ=255)
tGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGa < 3:747039/140‑1 (MQ=255)
ggCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGTCGTTAGCCACGAGCCGTGTTTTGTTTTATTTGGAAAAAAATGGGCCAATTATTTATAAAAAGAAGTAAATAAATCGCCCGCgggg > 1:63475/1‑138 (MQ=255)
ggCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGTGGGAAACACTGGCCCATTGTTTGAGAAACAGACGTAAATACAGCGCGCGCggct > 8:703207/1‑138 (MQ=255)
ggCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTGTAATTGATGTGGTAAACAAAGGACCAATGATTGATAAACATACCTGAAAACACCGCGCCCCGAt > 2:690968/1‑140 (MQ=255)
gCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGCACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGAtt < 7:981117/140‑1 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTg < 4:1014419/140‑1 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGTTGTGGAAAAAACGGGCCCAGTGTGTGAGCACCAGACGTAAAAACCgcgcgcgccccttg > 5:144849/1‑134 (MQ=255)
aaCTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTGTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGa < 7:629128/140‑1 (MQ=255)
tttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCaa < 7:343793/140‑1 (MQ=255)
tttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCaa < 1:729423/140‑1 (MQ=255)
tttAGTAATGCAGCGCCCTGATGATCAACTAACTGAATACTCGGGCGTTCGCCACGAGCCGTGTTTGCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCaa < 6:992547/140‑1 (MQ=255)
tGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCCCCCGGATTTTGGATCAAACCGGCaa > 8:467594/1‑139 (MQ=255)
aTCGCCCTGATGATCAATGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTc < 1:898461/140‑1 (MQ=255)
aTCGCCCTGATGATCAAAGCACAGAATACTCTGGAGTTCGCCACGAGCCGTGTTTTCTGTGATGTGGAAAACACTGGACCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTc < 7:427939/140‑1 (MQ=255)
aTCGCCCTGATGATCAAAGATCTGAATACTCTGGCGGTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTc < 3:523493/140‑1 (MQ=255)
cGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCg > 7:228109/1‑140 (MQ=255)
cccTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTTATGTTGAAAACACAGGCCCATTGATTTAGAAACAGACGTAAAGACAGAGCGCGCGGCTTGAGGATAAATACCGCAAGTACGtt > 2:208315/1‑140 (MQ=255)
cccTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGTTTTGGGAAACACGGGGCCCTTTTTTTTGAAAAAGCCCGAAATACAGCGCCCCCGGAGTGAGGTTCAATACGGCCTGtgagtt > 5:554266/1‑135 (MQ=255)
atCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCt < 6:12494/140‑1 (MQ=255)
atCAAAGAACTGAATACTCTGGCGTTCGCAACGAGCCGTGTTTTGATTGTTGTGGAAAACACAGGCCCATTGAATGAGAAAAAGACCTAAATACACCGCGCGCCGATTGAGGCACAATACGGCATTTACGATCaaaaaga > 2:500691/1‑136 (MQ=255)
cAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGTAAACACTGGGCCATTGATTGTGTAACCGCCGTTAAAACCGCGCGCGCGGTTTGAGGATACATCCGGCCTGTACGGTGAAAtggtgg > 2:142337/1‑140 (MQ=255)
cAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGTGGAAAACCCGGGCCCATTGATTGATAAACAGCCGGAAATCCCGCGCGCGCGGATTGAGGATCAATCCGGGCTGTCCGTGCAAATGCTgg > 4:731619/1‑140 (MQ=255)
aaCTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTTTTGTGGAAAACACTGGCCCCTTGTTTTGGATACAGTGGTTATTACAGCGCGCGCGGATTGCGGTTCAATCCGGCAGTTCCCTTCAAATTCTGGGTtgt > 6:959489/1‑140 (MQ=255)
ctctGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCAcc < 7:810069/140‑1 (MQ=255)
tctGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGTGGAAAACACGGGGCCATTTATTGAGAAAAAGACGTAAAAACCGCGCGCGCGGATTGAGGATAAATACGGCATGTCCGGTCAAATGCTGGTTTTTGAACGCCCCa > 4:775130/1‑140 (MQ=255)
tGGCGTTCGCCACGAGCCGTGTTTTGTTTTATGTGGAAAACACATGCCCATTGATTGAGAAAAAGAAGGAAATACAGCGCGCGCGGAAGGAGGATGATTACGGCATGTGCGGTCAAATGCTGGGTTGTGGACGCACCAAc > 6:830960/1‑140 (MQ=255)
tGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAAc > 4:842157/1‑140 (MQ=255)
tGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAAc < 8:228109/140‑1 (MQ=255)
tGGCGTTCGCCACGAGCCGTGGTTTGTTTGATGTGGAAAACAATGGCCCATTGATTGAGAAACAGACGGTAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGGTGAAATTCTGGGTTGTGATCGCACCAAc > 8:282827/1‑140 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAACCACTGGCCCATTGATTGAGAAACAGTCGTAACTCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGGCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 5:655210/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTTATTGAGAAACAGACGTAAATCCAGCGCGCGCTGATTGAGGATCAATCCGGCATGTCGGTTCAAATGCTGGGTTGTGAACGCACCAACt < 2:946051/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCNGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 7:765292/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 7:179042/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 3:872643/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 5:341033/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGGGTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 8:416017/140‑1 (MQ=255)
cGTTCGCCACGAGCCGTGTTTTGTTTGATGTGGAAAACACGGGCCCAGTTAGTGAGAAACAGCCGGAAATACCGCGCGCGCGGGTTGATGGTGAAACCGGCATGTCCGGTCTAATGCGGGTTTGTGTAGGCACGAACTTg > 2:438658/1‑140 (MQ=255)
cGTTCGCCACGAGCCGTGGTTTATTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATACAGCGCGCGCGGATTGAGGGTCAATCCGGCATGTCCGGTGATATGCTGGTTTGTGAACGCACCAACTTg > 4:872643/1‑140 (MQ=255)
cGCCACGAGCCGTGTTTTGTTTGATTGGGGTAACACTGGCCCCTTGGTTTGGGAACAGACGTAAATCAAGCGCGCGCGGATTTAGGTTCACTAAGGCATGTGCGGTGAAATGGTGGGTTTTTGACGCACCCACTAGttga > 4:535163/1‑138 (MQ=255)
cGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCa < 4:1051758/140‑1 (MQ=255)
cGCCACGAGCCGTGGTTTGTTTGTTGTGGGAAACACTGGGCCATTGATTGAGAAACAGACGTTAATACAGCGCGCGCGGCTTGAGGATCAATCCGGGATGTCCGTTCAAATGCTGGTTTGTGAACGCCCCAACTTGttga > 2:160238/1‑138 (MQ=255)
cGCCACGAGCCGTGGTTTGTTTGATGTGGGAAACCCTGGCCCCGTGGTTGAGAAACAGACGGAAATCCAGCGCGCGCGGATTGTGGCGCAATCCGGCATGTGCGTTCCACTGCTGGTTTGTGAGCGGACCAACGTGTTCa > 6:711724/1‑140 (MQ=255)
gCCACGAGCCGTGTTTTGTTTGATGTGGGAAACACTGGCCCATTGTTTGAGAAACAGCCGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATTTCCGGTCAAATGCTGGTTTGTGAACGCACCAACTTGTTGAt > 8:770192/1‑140 (MQ=255)
aCGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGa < 1:166682/140‑1 (MQ=255)
aCGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGa < 3:1023312/140‑1 (MQ=255)
gtgtTTTCTTTGATGTGGAAAACACTGGACCATTGATTGAGAAACATACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTa < 8:899221/140‑1 (MQ=255)
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CGTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTA > NZ_CP022686/2394148‑2394423
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
