Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F11 I0 R1
|
249 |
11230.8 |
10274356 |
98.4% |
10109966 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,394,287 |
T→G |
17.2% |
N115T (AAC→ACC) |
chuS ← |
hematinate‑forming heme oxygenase ChuS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,394,287 | 0 | T | G | 17.2%
| 443.5
/ 34.0
| 289 | N115T (AAC→ACC) | chuS | hematinate‑forming heme oxygenase ChuS |
| Reads supporting (aligned to +/- strand): ref base T (95/136); new base G (54/2); total (149/140) |
| Fisher's exact test for biased strand distribution p-value = 9.53e-16 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 301 total aligned reads displayed.
CGTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTA > NZ_CP022686/2394148‑2394423
|
cgTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGTCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCgtgt < 5:69486/140‑1 (MQ=255)
tctcATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCt < 2:736716/140‑1 (MQ=255)
accgggTGATAAACCTGGAGAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCTTAAACTTTTAGTAATGCATCGCCCTGATGAGCAATGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTg < 7:793544/136‑1 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGa > 8:531120/1‑140 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGa > 6:29728/1‑140 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCAACGCCCTGATGATAATAGAACTGAATACTCTGGCGTTCGCCACGAGCCGAGttttagttgt > 8:198064/1‑134 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGAATTGTCGGTGGCTTAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGAGGTTTCTTTgt > 8:606318/1‑139 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTtttattttat > 6:134878/1‑140 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAt > 5:591785/1‑140 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAt > 2:653587/1‑140 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGATGGCATAAACTTTTAGAAATGCATAGCCCAGATGATAAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGttttatatgtt > 2:1213746/1‑133 (MQ=255)
ggTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGGTTTGTTTTAt > 3:160693/1‑138 (MQ=255)
ggTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAtgt > 2:815545/1‑140 (MQ=255)
tGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTgg > 2:566675/1‑140 (MQ=255)
tGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTTATTTgg > 1:149386/1‑140 (MQ=255)
aCCGTGCCAGAAGCTCACTCCATGCCTCCTTATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGTTGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAac‑a < 7:268675/140‑1 (MQ=255)
ccGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGTGGAAAac > 4:187338/1‑138 (MQ=255)
tGCCAGAAGCTCTCTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTATTTGATGTGGAAAAC‑ACggg > 7:409668/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGTTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAAATGAATACTCTGGCGTTCGCCACGAGCCGTGGTATCTTTGATGTGGtaaaacgagg > 8:774502/1‑134 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATGTGGAAAAC‑ACTgg > 2:368649/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGATGTGGAAAAC‑ACAgg > 1:1059768/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTTTTGTGGCAAAC‑ACAgg > 7:64144/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCAGGCGTTCGCCACGAGCCGTGGTTTATTTGAAGTTTAAAac‑acgag > 1:976145/1‑137 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGAATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCAGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGAATGTAGTGGAAAaccaggg > 1:593672/1‑135 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGCAAAC‑ACTgg > 4:317858/1‑138 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTATTTGATGTGGAAAAC‑ACAgg > 3:734695/1‑138 (MQ=255)
aaGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGATGTGGAAAAC‑ACGGGCCCatt > 8:8459/1‑140 (MQ=255)
gCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTATTGCATCGCTCTGATGATCAAAGAACTGAATACTCTGGCGTTAGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCattga < 8:1099547/140‑1 (MQ=255)
cACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGTTTTATTTTTTGGTGAAAAA‑ACAGGGCCattgtttt > 5:346744/1‑139 (MQ=255)
aCTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCAttgattga > 2:1084422/1‑140 (MQ=255)
aCTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTTATGTGGAAAAC‑ACAGGCCCattgattgt > 5:789002/1‑139 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTTATTGAGAAACa > 2:973896/1‑140 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGaaa < 4:389111/138‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGaaa < 4:483657/138‑1 (MQ=255)
gccgccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTATTTGATTTGGAAAAC‑ACAGGCCCATTTATTGAGaaaaaa > 2:483778/1‑137 (MQ=255)
ccgccATATCGGTAATGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGATGTGGAAAAA‑ACTGGCCCATTGATTgagataaa > 4:903692/1‑134 (MQ=255)
ccgccATATAGGTATTGTCGGTGGCATAAACTTTTAGTAATGAATAGACATGATGATAAAAGAACTGAATAATCTGTCGTTAGCCACGAGCCGTGTTTTATTTGAATTTGAAAAA‑AATTGCCCAATTATTTAGAAACa > 4:129378/1‑138 (MQ=255)
gccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACg < 8:342856/140‑1 (MQ=255)
cATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATTTGGGAAAA‑ACAGGCCCATTGATTTAGAAACAGACGTa > 1:323743/1‑140 (MQ=255)
cATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGATGTGGGAAAC‑ACTGGCCCATTGATTGTGAAACAGACGTa > 1:775152/1‑140 (MQ=255)
gTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTCAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAg < 6:85895/140‑1 (MQ=255)
aTTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTTATGTGGGAAAC‑ACTGGCCCAGTGATTGAGAAACAGACGGAAATACAgcc > 6:436384/1‑139 (MQ=255)
tCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGATCCGTGGTTTATTTGATGGGGCTAAC‑ACTGGCCCCTTGAGTGAGAAACAGCCGTAAAAACAgcgcgcc > 7:893036/1‑139 (MQ=255)
tCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTTATGTGGAAAAC‑ACTGGCCCCGTGATTGGGAAACAGGCGGAAATGCAgcgcgcg > 2:294584/1‑140 (MQ=255)
gcGGTGGCATAAACTTTTAGAAATCCAGCGCCCTGATGATCAAAGAACTGAATACTCTCGCGTTCGCCACGTGACGGGTTTTCTTTGATGTTGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAgcgcgcg < 2:1112438/139‑1 (MQ=255)
cGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTTATGTGGAAAAA‑ACTGGGCCATTTTTTGTGAAACACACGTAAAACCAgcgcgcgc > 2:543925/1‑140 (MQ=255)
ggTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGTAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATACAgcgcccc > 3:1152299/1‑135 (MQ=255)
ggTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGcgcgcgcg < 2:389717/140‑1 (MQ=255)
ggTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGAATGAGAAACAGACGTAAATCCAgcgcgcgcc > 8:900834/1‑139 (MQ=255)
ggTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCGTTGTTGTGGTAAAC‑ACAGGCCCATTGATTGATAAAAAAACGTTAATACCgcgcgcgcc > 8:140145/1‑139 (MQ=255)
gTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGGTTGTTTTTTGTGGACAAC‑ACCGGGCCAGTTGTTGAGAAAACTACGTATATAAAGCGCCCGCgg > 1:647472/1‑140 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGaaa > 3:974810/1‑112 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGaaa < 4:974810/112‑1 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAAATGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTg < 7:15275/140‑1 (MQ=255)
tAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACGCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAg < 1:1146441/140‑1 (MQ=255)
aCTTTTAGTAATGCATCGCCCTGATGATCACAGAACTGAATACTCTGGCGGTCGCCACGAGCCGTGCTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGAt < 6:1178625/140‑1 (MQ=255)
aCTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGAt < 7:221972/140‑1 (MQ=255)
tttAGTAATGCATCTCCCTGATGTTCATAGAACTTAATACTCTGGGGTGCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACTGACGTAAATCCAGCGCGCGCGGATTGAGGATCaa < 1:1112118/140‑1 (MQ=255)
tttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATc < 4:598910/138‑1 (MQ=255)
tttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGGTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCaa < 6:1041395/140‑1 (MQ=255)
tttAGTAATGCATCGCCATGTAGCTCAAACAACTGACTAGTCTGGCGTTCGCCACGAGCCGTGATTTCTTTTCTGTGGAAAAC‑ACTTGCCCATTGATTGCGAAACAGTCGTAAATCCAGCGCGCTCGTTTTGAGGTTCaa < 6:1127776/140‑1 (MQ=255)
ttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGATGTTGTAAAC‑ACTGGCCCATTGAATGAGAAACAGAACTAAATACAACGCGCGCGGATTGAGGATCaaa > 5:429998/1‑139 (MQ=255)
tgatgaTCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCaa < 6:933553/140‑1 (MQ=255)
atgatCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTTTTTGATGTGGCTAACAAATGCCCCATT‑ATTGAGAAACACAAGGAAATCCAGCGCGCGCGGATTGAGGTTCAATCCGGCATGTACGGTCaaaa > 5:248773/1‑139 (MQ=255)
cAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCAATGATAGAGAAACAGACGGAAATCCACCGCGCGCGGCTTGAGGAACAATCCCGCATGTCCGGTCAAATGCTgg > 5:218550/1‑140 (MQ=255)
cAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGATGTGGAAAAC‑ACTGGCCCATTTATTTAGAAACAGACGTAAATACACCGCGCGCGGATTGAGTCTAAATCCGGCAAGTCCGTTAAAATGCTgg > 8:1000223/1‑140 (MQ=255)
aaCTGAATACTCTGGCGTTCGCCACGAGCCTTGGGTTGTTTGATTTGGGAAAC‑AAGAGCCCATTTATTTATAAACAGACCTAAATCAAGCCCGCGCGGATTTAGGATCACTACCTCAGGTACCGTCAAAAGCTGTTTtgt > 2:264135/1‑140 (MQ=255)
tGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTtgtg < 3:784363/138‑1 (MQ=255)
aaTACTCTGGCGTTCGCCACGAGCCGTGGGTTGTTTGATGTGGGAAAC‑ACTGGCCCCTTGTTTGTGCAACACACGGAAATCCAGCCCGCGCGGATTGCGGGTGAAACCGGCCTGGCCGTGGAAATGCTGGTTTGTGTAcc > 6:752371/1‑139 (MQ=255)
tcctctGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCa < 6:187510/138‑1 (MQ=255)
tACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCa < 1:397724/140‑1 (MQ=255)
tACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCa < 7:522772/140‑1 (MQ=255)
tACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCa < 5:1070705/140‑1 (MQ=255)
tACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACGGGCCCATTGATTGTGAAACCGACGTAAATACAGCGCGCGCCGATTTAGGATCAATCCGGCCTGTCCGTTGAAATGCTTGTTTGTGAACg > 4:697561/1‑138 (MQ=255)
ctctGGCGGTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCa < 3:234657/138‑1 (MQ=255)
tctGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTTGAAAAC‑ACAGTCCCATTGTTATTCAAAAACACGTAAATACACCCCGCGCCGAATGAGGATCAAACAGGCATGTCCGTTGAAAATATGGTTTTTGAACCCAccc > 2:441676/1‑139 (MQ=255)
tctGGCGTTCGCCACGAGCCGTGTTTTATTTGATGTTGGAAAC‑ACGGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGAGTGAGGATCAATCCGGCATGTCCGTTAAAATTCTGGTTTGTTAACTCACCa > 2:127155/1‑140 (MQ=255)
tctGGCGTTCGCCACGAGCCGTGGTTTCTTTTATGTGGAAAAC‑ACTGGCCCATAGATTGAGAAACAGACGTAAATCCAGCGCGCGCCGGTTTAGGATCAATCCCGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCa > 8:16803/1‑140 (MQ=255)
ctGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 2:153493/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 3:1244066/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 3:898508/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 3:340559/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 6:1245733/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 6:655390/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGGAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCATATGCTGGTTTGTGAACGCACCAACt < 1:1253862/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGACCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 5:97554/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTATTTGTAGTGGAAAAC‑TCTGGCCCATTGATTGAGAAACAGACGTAACTCCAGCTCGAGCTGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 7:538189/140‑1 (MQ=255)
ggCGTTCGCCACGAGCAGTGTTTTCATTGATGTGGAAAAC‑ACTGGCACATTGATTGAGAAAGAGACTTAAATCCAGCGCGCGCGGATTGAGGATCAATACGGCATTTCCGTTCTAATGCTGGTTTGTGAACGCACCaa < 4:109979/138‑1 (MQ=255)
ggCGTTAGCCACGAGCCGTGTTTTCTTTGATGTTGAAAAC‑ACTGTCGCATTGATTTAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCAGTTCTTATGCTGGTTTGTGAACGCACCAACt < 2:188367/140‑1 (MQ=255)
cGTTCGCCACGCGCCGTGGTTTGTTTGTTGTGGTAAAC‑ACTGGCCCAGTGGTTGAGGAACAGACGTAAATCCAGCGCGCGCGGTTTGAGGGTCAATCCGGCCTGTGCGGTGAAATGCTGGTTTGTGGACGCCCCCCCTTg > 6:467216/1‑140 (MQ=255)
cGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCCATTATTGAGAAACAGCCGGAAATCCCGCGCGCGCGGAGTGAGGATCAATCCGGCGAGTACGTTCCAATGGTGGGTTGTGGACGCCCCAACTTg > 8:1047006/1‑140 (MQ=255)
ttCGCCACGAGCCGTGTTTTGTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTg > 4:118062/1‑138 (MQ=255)
aCGAGCCGTGTTTTCTTTGATGTTGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCATCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTTGTTTGTGAACGCACCAACTTGTTCATGGa < 1:225583/140‑1 (MQ=255)
aCGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATg < 3:568900/138‑1 (MQ=255)
aCGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGa < 1:517633/140‑1 (MQ=255)
cGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGAc < 5:902877/140‑1 (MQ=255)
aGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTg < 2:922038/140‑1 (MQ=255)
gCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACATAAGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTTGTTTGTGAACGCACCAACTTGTTCATGGACTGc < 5:387682/140‑1 (MQ=255)
gtgtTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTa < 5:919838/140‑1 (MQ=255)
gtgtTGTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTa < 5:291089/140‑1 (MQ=255)
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CGTATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAC‑ACTGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTA > NZ_CP022686/2394148‑2394423
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
