Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F12 I0 R1
|
192 |
11691.1 |
8856334 |
98.4% |
8714632 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,394,287 |
T→G |
16.2% |
N115T (AAC→ACC) |
chuS ← |
hematinate‑forming heme oxygenase ChuS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,394,287 | 0 | T | G | 16.2%
| 399.3
/ 23.0
| 248 | N115T (AAC→ACC) | chuS | hematinate‑forming heme oxygenase ChuS |
| Reads supporting (aligned to +/- strand): ref base T (88/113); new base G (44/2); total (133/115) |
| Fisher's exact test for biased strand distribution p-value = 8.88e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 256 total aligned reads displayed.
TATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCG > NZ_CP022686/2394150‑2394421
|
tctcATCGTTGATAAACCGTGCCTGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGGGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGATCTGAATACTCTGGCGTTCGCCACGAGCCGTGtttt < 3:88998/138‑1 (MQ=255)
cATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCtt < 4:953573/138‑1 (MQ=255)
tCGGGGATAACCCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAt < 7:678046/140‑1 (MQ=255)
cGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTAGCCACGAGCCGTGgtttgggtgg > 1:881404/1‑132 (MQ=255)
gATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑a < 8:152264/140‑1 (MQ=255)
aTAAACCGTGCCAGATGCTCACTCCATGCCGCCATATAGGTATTGGCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGAGGGCGCCACGAGCCGTGTTTTCTTTGATGTGG‑aa < 6:153432/140‑1 (MQ=255)
aTAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCTGTGGCATAAACTGTTAGTAATGCATCGCCCTGATGATCAAATAACTGACTACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTgg < 1:1041468/138‑1 (MQ=255)
aTAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGtttattttattttgtt > 7:581993/1‑134 (MQ=255)
aTAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGGGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑aa < 7:260212/140‑1 (MQ=255)
aCCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAaca < 8:42789/140‑1 (MQ=255)
cGTGCCAGAAGCTCACTCCATGCCGCCATCTCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCAGCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAaca < 1:873820/138‑1 (MQ=255)
cGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAaca < 4:350454/138‑1 (MQ=255)
cGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACt < 8:74303/140‑1 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGCTCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGGTTGGTGGGG‑GAAaccatgg > 6:758727/1‑135 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGGTTTTTTTGTTGTGGTAAAacatgg > 5:826236/1‑137 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTAGTTGATGTGG‑TAAACCCT‑gg > 5:1045723/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGATGTTTAGTTGATGTTG‑AAAACACA‑gg > 7:656560/1‑140 (MQ=255)
gCCAGAAGATCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTTTTTGATGTGGTAAAacaag > 3:1025863/1‑136 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAATGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGTTTTGG‑AAAAAACT‑gg > 1:803703/1‑138 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAtgtg < 1:348159/127‑1 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAtgtg > 2:348159/1‑127 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCATTGATTTGG‑AAAAAACT‑gg > 1:758327/1‑138 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGAGGTGG‑AAAACACT‑gg > 2:125862/1‑138 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGATGTGG‑GAAACACg‑gg > 2:184004/1‑138 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGGTTGTTTGGTGTGG‑AAAACACA‑gg > 2:589396/1‑138 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCGGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTGTCTTTGATGTGG‑CAAaccaggg > 2:516692/1‑133 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATAGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGGCCTGATGATCAAAGAACTGATTACACTGGCGTTCGCCACGAGCCGTGTTTTCGTTTAAGTGT‑AAAACACg‑gg > 3:237994/1‑138 (MQ=255)
cACTCCATGCCGCCATATCGTTATTGTCGGGGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCattgattg < 6:713581/140‑1 (MQ=255)
cACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCCCGAGCCGTGGGTTGGTGTATTTGG‑AAAACCCG‑GGGCCcttgattt > 6:774248/1‑139 (MQ=255)
tCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGACCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAAGTGG‑AAACCAAA‑GGCCCattgattgg > 4:885441/1‑137 (MQ=255)
cATGCCTCCTTATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCAGCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAGACACT‑GGCCCATTGATTgaga < 4:70330/138‑1 (MQ=255)
aattccgccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTgaga < 1:1099745/134‑1 (MQ=255)
tGCCGCGATATCGGTTTTGTCGTGGGCATAAACTTTTAGTAATGCTGCGCCCTGATGATCAAAGAACTGAATTCTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACa < 8:677212/140‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTCGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGaaa < 1:300059/138‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGGTGTGG‑AAAACACT‑GGCCCAATGATTGAGAAACa > 8:921958/1‑140 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGaaa < 2:353942/138‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGaaa < 3:108732/138‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACa < 5:88564/140‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTTTTGTGG‑TAAACACT‑GGCCCATTGTTTGAGTAACa > 5:145211/1‑140 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTATTTGATGTGG‑GAAACACA‑GGGCCATTGATTGAGAAACa > 7:953287/1‑140 (MQ=255)
tGCCGAGATATCTGTATTTGCGGTTTCATTATCTTTTAGTAATCCCTCGCCCTGATGATCAAATAACTGAATACTCTGTCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACa < 6:615787/140‑1 (MQ=255)
ccgccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGTTTTTG‑AAAAAACT‑GGCCCATTGATTGAGgaaaa > 2:101053/1‑136 (MQ=255)
ccgccATATCGGTATTCTCTGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGTCGTTCGCCACGATCCGTGTTTTGTTTTATGTGG‑AGAATCCG‑TGCCCATAGAATGTGAAACa > 3:163492/1‑138 (MQ=255)
gcgatatCGGTATTGTCGGTTGCATAAACTTTTAGTTATGAATCGCCCTGATGATCAATGAACTGAATACTCTGGCGTTCGCCTCGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGa < 1:189656/135‑1 (MQ=255)
gcattatCGGTATTGTCGGTGGCATAATCTTTTAGTATTGCATCGCCCTGATGATAAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTTAGAAACAGa < 4:808451/134‑1 (MQ=255)
cATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGTTTTGTTTTTTGGTG‑GAAACACT‑GGCCCATGGATTGTGAAACAGACGTa > 6:399804/1‑140 (MQ=255)
cATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGGTTTGTTTGTTGTGG‑TAAACAAA‑GGCCCCTTTATTGAGGAACAGACCTa > 5:325736/1‑140 (MQ=255)
cATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGATTTATTTGG‑AAAACACTAGGCCCA‑TGATTGAGTAAAACACgaa > 5:228802/1‑138 (MQ=255)
atatCGGTATTGTCGGTGGCATAAACGTTTAGTAATGCATCGCCCTGATGATCAAAGATCTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTATTTGATTTGG‑TTAACACG‑TGCCCAGTGATTTAGAAACACACgg > 1:263802/1‑137 (MQ=255)
tatCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTTATTTGG‑AAAACACT‑GGCCCATTTATTGAGAAACAGACGTa > 2:1090179/1‑138 (MQ=255)
tatCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTTATGTGG‑TAAACACT‑GGCCCCTTTATTGAGCAACAGACGTa > 2:957155/1‑138 (MQ=255)
tatCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑TAAACACT‑GGCCCATTGATTGAGAAACAGCCgga > 3:446608/1‑136 (MQ=255)
tatCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTAGTTGATGTGT‑TAAACACG‑GGCCCATTGATTGAGAAAAAAACGTaaa > 8:493455/1‑140 (MQ=255)
tGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCTTTCTCCACGAGCAGTGTTTTATTTGATGTGT‑CTAACAAT‑GGCCCATGTATTGCTAAACAGACGTTAATCCAgcg > 4:601554/1‑138 (MQ=255)
gTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAgcgc > 2:824448/1‑138 (MQ=255)
tctgTGGCATAAACTTTTAGTAATGCTTCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAgcgcg < 1:1146440/135‑1 (MQ=255)
tCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAgcgcg < 3:544524/138‑1 (MQ=255)
ggTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAAAAGACGTAAATCCAGcgcgcgcg > 8:265115/1‑140 (MQ=255)
gCATAATCTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGa < 4:756598/138‑1 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACACACGTAAATCCAGCGCGCGCGGAt > 4:204235/1‑138 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAAAAAT‑GGCCCATTGATTGATAAACAGAAGGAAATACATCGCGAGCGGAt > 3:814374/1‑138 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGTGG‑AAAACACT‑GGGCCAATGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGAt > 2:479679/1‑138 (MQ=255)
aaTAAACTTTTAGTAAAGCAACGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGAt < 3:582044/137‑1 (MQ=255)
aaCTTTTTTTAATGCATCGCCCTTATGAGCAAAGCACTGAATACTCTGTCGTTCTCCAAGAGCCGTGTTTTCTTTGATGTGT‑AAAATACT‑GGCCCATTGATTGAGAACTAGACGTAAAACCTGCTCGCGCGGATTGAGGa < 8:343013/140‑1 (MQ=255)
aaCTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGa < 5:444693/140‑1 (MQ=255)
aaCTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTTATGTGG‑AAAACACA‑GGCCCATTTATTTAGAAACAGACGTAAATACACCCCCCCCGGATTGAg > 1:220185/1‑138 (MQ=255)
aaCTTTTAGTAAGGCATCCCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAg < 3:1069685/138‑1 (MQ=255)
attttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGa < 4:391231/137‑1 (MQ=255)
ttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAAt < 5:991958/140‑1 (MQ=255)
gTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTTATGTTG‑GAAACACA‑GGCCCCTTGATTTAGAACCAGCCGTTAATACACCGCCCGCCGATTGAGGATCAAta > 3:29685/1‑137 (MQ=255)
tAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATcc < 1:572440/138‑1 (MQ=255)
tGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGTTTTGTTTGATGTGG‑CAAACACT‑GGCCCATTGATTGAGAAAACGACGTAAATACACCGCCCCCGGAGTGAGGATCAATCCCGCaa > 7:164393/1‑139 (MQ=255)
gCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGATGTGG‑TAAACACT‑GGCCCATTGTTTGAGAAACAGACGTTAAACCAGCGCCCGCCGGTTGAGGATGCATACGGCGTg > 6:867072/1‑140 (MQ=255)
cATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGTGG‑AAAACACT‑GGCCCAATGATTGAGAAACAGACGTAAATCCAGCGCCCGCGGAGTGAGGATCAAACCGGCaa > 3:963729/1‑137 (MQ=255)
aTCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACCTAAAAACAGCGCGCGCGGATTGAGGATCAATACCGCAtt > 4:1067558/1‑137 (MQ=255)
cccTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGTTGTGG‑AAAACACA‑GGCCCAATGTTTGAGAAACAGACGTAAATACAGCGCGCGCGGATTGAGGGTCAATCCGGCAtctgtgta > 6:488396/1‑133 (MQ=255)
ccTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGt < 4:85779/138‑1 (MQ=255)
aaGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCCTTGATTGTGAAACAGAAGTAATACCCCACCGCGAGGATAGAGGAACATACCCGCATGTCCGTTGAAATGCTgg > 4:675843/1‑138 (MQ=255)
tACTCTGGCGTTCGCCACGAGAGGTGTTTTCTTTGATTTGG‑AAAACACT‑GGCCCATTGATTGAGAAAAAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTGTGTGAACGCa < 8:629654/140‑1 (MQ=255)
ctGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑ATAACACT‑GGCGCATTGATTGAGATACAGACGTAAATCCAGCGCGCGATGATTGAGGATCAATCGGGCATGTCCGTTCTAATGCTGGTTTGTGAACGCACCat < 7:606512/140‑2 (MQ=255)
ctGGCGTGCGCCTCGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 8:490536/140‑1 (MQ=255)
ctGGCGTGAGCCACGAGCCGTGTGTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATGGAGACACAGACGTAAATCCAGCGCGCGCGGATTGAGGAGCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGAACCaa < 6:301338/140‑1 (MQ=255)
tGGCGTTCGCCAGGAGCCGTGTTTTCTTTGATGTTG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAAc < 8:1013049/140‑1 (MQ=255)
tGGCGTTCGCCACGAGCCGTGGTTTAGTTGTTGTGG‑TAAACACA‑GGCCCAATGATTGAGAAACAGACGTAAATAACGCGCGCGCGGATTGAGGCTCTATCAGGCAAGTACCTTAAAATGCGGGTTTGTGAAAGCCCCacc > 6:687952/1‑138 (MQ=255)
ggctgtCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACTCT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 2:763020/133‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGCCGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 2:229829/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 1:54279/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 2:472443/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 2:728910/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 6:552942/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 8:784708/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 7:736262/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTATCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 1:1060375/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGGTTTGGTTGATTTGG‑TAAACACT‑GGGCCATTGATTGAGAAAAAGGCGGTAATCCAGCGCGCGCGGTTTGTGGCTCAAACCGGCCTGTCCGGTCAAAATCTGGTTTGTGAAAGCCCCAAca > 6:268380/1‑139 (MQ=255)
agagacagCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 5:969240/133‑1 (MQ=255)
gCGTGCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACtt < 7:891039/140‑1 (MQ=255)
gCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTc < 4:1089628/138‑1 (MQ=255)
aCGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTTAACGCACCAACTTGTTCATGGa < 5:519240/140‑1 (MQ=255)
aCGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGGCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATg < 4:232859/138‑1 (MQ=255)
gAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAACTCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGa < 3:404667/138‑1 (MQ=255)
|
TATTCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGG‑AAAACACT‑GGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCG > NZ_CP022686/2394150‑2394421
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
