Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F12 I0 R1
|
192 |
11691.1 |
8856334 |
98.4% |
8714632 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,547,110 |
G→C |
20.9% |
intergenic (+22/‑12) |
CIW80_RS07710 → / → CIW80_RS07715 |
tRNA‑Met/tRNA‑Met |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,547,110 | 0 | G | C | 20.9%
| 92.8
/ 7.2
| 67 | intergenic (+22/‑12) | CIW80_RS07710/CIW80_RS07715 | tRNA‑Met/tRNA‑Met |
| Reads supporting (aligned to +/- strand): ref base G (35/17); new base C (11/3); total (47/20) |
| Fisher's exact test for biased strand distribution p-value = 5.24e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGC > NZ_CP022686/1546971‑1547238
|
ggctaataaTTATAATTTTTTGTAGTTAGGGATTACTGGGACGCGGGGTGGAGCAGCATGGTAGATCGTAGGGCTAATTACCCGATGGTCTTCGGTTCAAATCCGGCCCCCTCAACCAATCAAAATTTGATGAAATAAAg < 6:996215/133‑1 (MQ=2)
cGCAAAGAAATAAAATTTCTTGAATTAATGCAGTACTGTGACGCGGTGTGGAGCAGCATGGTAGATCGTCGGGCTCATAACACGAAGGTCGTCGGTTCAAATCAGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg < 8:652951/140‑1 (MQ=17)
cAACCAAATAAATATTTTTGAAGTTTCGCCGTCCTGGGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg < 2:300720/138‑1 (MQ=11)
ttAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATTCGGCCCCCGCAACCAATGAAAAATTAATCATAAAAACCAGTACGGt > 8:497738/1‑140 (MQ=14)
aaaaaTTTGATGAATTATCCCCTTACGGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTg < 7:706152/139‑1 (MQ=11)
actttCATGAAGTAACGCAGTCCGCTGACGCGGGGTGGAGCAGCATGGTAGCTCGGCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGAcg < 5:247355/138‑1 (MQ=14)
aattatatgaAGTAAAGCAGTACGCGGACGCGGGGGGGAGCAGCCTGGTAGCTCGTCGGGCTCATATCCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGAcg < 5:620530/134‑1 (MQ=14)
tgatgaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCCACCAATCTAATTTTGAGGTTATAAAGCACTACGGTGCCGCtgg > 6:887913/1‑140 (MQ=14)
atacccgCATTACGGTGACGCGTGTTGCTGCAGCTTGTTAGGTCGTCGGTCTCTTAACCCGAAGGTCGTCGGTGGAAATCCTGCCCCCGCAAGCAATCAAAATTTGATGAAATTACGCAGTACTGGGACGCGGGGTgg < 2:1140497/132‑1 (MQ=9)
ataagaGCATTCCGGTGAAGCGGGGTGGAGCAGCTTGGTAGCTCGGCGGGCTCATAACCCGAAGGTCGTCGGTTCCAATCCTGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTgg < 1:628985/133‑1 (MQ=14)
agacacgCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTAGGCGGGCTCATAACCCGAAGGGCGGCGGTTCAAATCCGGCCCCCGCAACCAATCAAACTTTGATGAAATAAAGCAGTCCGGTGACGCGGGGTgg < 3:440623/132‑1 (MQ=14)
tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCTGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCTATATTAGATCAAATAAACACCTACGGTGCCAGTGGCTGGAGCAGCCTGGtt > 8:919080/1‑139 (MQ=14)
tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAATATTTGATGAAATAAACCAGTACGGTGCCGCGGGGTGGAGGAGCCTGGtt > 7:720671/1‑139 (MQ=255)
tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATCAAATAAAGCACTACGGTGACGCGGGGTGGagcagagtgggt > 7:941131/1‑133 (MQ=255)
cGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTAGTTGATATAAAGCAGTAAGGTGACTAGGGGTGGCGCTGACTGCTa > 1:891625/1‑138 (MQ=11)
cGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAAATTGTTGAAAAAAACCAGAACGCTGACAAGGGGTTGAGCAGAATGGtt > 3:617260/1‑137 (MQ=11)
cGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCAAATCCGGCCCCCGCCACCAATCAAAATTTGATGAAAAAAAGCAGTACGGTGACGCGGGGTGGCGCATCATGGtt > 4:798012/1‑137 (MQ=11)
tGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGATGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATAAGAAGAAAAAAACCAGAACGCTGACGCGGGGTGCAGCAGCCTGCTAGCtcc > 7:993574/1‑139 (MQ=14)
aCGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTAGATGAAAGAAAGCAGTAAGGTGACGAGGGGTTGAGCAGAGTGGTAgatag > 4:368011/1‑134 (MQ=11)
cgcgGTGTGGAGCAGCTTGGTAGCTAGTCGGGATAATAACCCGAAGGTCGTCGGTTCAAATCCGTCCCCCGCAAACAATAAAAATTATATGAAATAAACCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCtcgtcg < 7:616829/140‑1 (MQ=11)
cgcgGGGGGGAGCAGCTTGGTCGCTCGTCGGGCACAAAACCCGAAGGGCGGCGGGTCAAATCCGGCCCCCGCCACGAAACAAAATGAGCTGAAATAACCCCCTCCGCTGACGCGGGGTGGAGCAGCCTGGTAGCtcgt < 3:8525/138‑1 (MQ=2)
cgGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCCAATCCGGCCCCCGCCACCAATCTATATTTGTTGATATAAAGCAGAACGCTGCGGCTGGGTTGAGCGGCGTGGGGGGTCGACggg > 7:806363/1‑140 (MQ=2)
cgGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATATAATTTTGATGAAAGAAAGCTGAAAGGTGAGGCTGGGTGGCGCAGGCTGCTAGGtcgagcgg > 6:660808/1‑135 (MQ=11)
cgGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGCCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGAGGTAATAAACCAGTACGGTGACTCGGGGTTGCGCAGCCTGGGAGATAGTCggg > 7:604180/1‑140 (MQ=14)
gggTGGTGCAGCATGGTAGCTCGTCGGGCGCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCggg < 3:366277/138‑1 (MQ=255)
gggTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATATAGATGATATAAAACAGAACGGTGCAGAGGGGTGGCGCTGAGTTGTTGATCGTCggt > 4:295099/1‑137 (MQ=11)
gggTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGATATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCggg > 4:755715/1‑138 (MQ=255)
gggTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTGATGAAAAAAAGCTGAACGGTGAAGCTGGGTGGAGCAGCATTGTAGATCTGCggg > 3:222682/1‑138 (MQ=11)
gggTGGAGCAGCATCGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCTAATCCGGCCCCCGCAACCAATCAAATATTGATCAAAAAAACCACAACGCTGCGGCGGGGTGGCGCCGCCTGGGAGCTGGTCggg > 3:986703/1‑138 (MQ=14)
tGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATATAATATTGATGATAAAAAGCAGTAAGGTGACGGGGGGTGGCGCAGCATGGTTGTTAGTCGGGcga > 3:319990/1‑136 (MQ=11)
gggATCAGCAAGGTAGCTCGTCGGTCTAATAACCCGAATGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACCGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTc < 1:376920/137‑1 (MQ=14)
gggAGCAGCCTGGTCGCTCGTCGGTCTCTAAACCCGAAGGGCTTCGGGTCAAAACAGGCCCCCGCAACCAATCAAAATTTGCTGAAATAAAGCCTTACCGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCAt < 6:459497/139‑1 (MQ=11)
gggAGCAGCATGGTAGCTCTTCGGGCTCATACCCCGAAGGTCGGCGGGTCACATCCGGCCCCCGCAACCACTCAAAATTTGATGAAATCAAGCATTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCAt < 5:971093/139‑1 (MQ=14)
gAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCTAAATTTAAGGAGAAAAAGCACTACGCTGACTAGGGGTTGCGCAGAATGCTAGCTCGGCGGGcacaa > 2:984702/1‑137 (MQ=11)
gAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAAAAAAGCAGTACGGTGACGCGGGGTGGCGCAGCCTGGTAGCTAGGCGGGCTctt > 1:151585/1‑136 (MQ=14)
cagcaTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGATATAAAGCCGTAAGGTGCCGCGGGGTGGAGGAGACTGGTCGCTAGTCGGGCTCATAAc > 3:278184/1‑138 (MQ=14)
ggaTGGTTGCTCGTCGGTATCAAAACCCGAAGGTCGTCTGTTCAAATAAGGCCCCCTCAACCAATAACACATTGATGAAATAACGCAGTACGGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAAccc < 2:243262/136‑1 (MQ=11)
ggaTGGTAGCTCGGAGGGCTCATAACCCGAAGGTCTGAGGTGCTAATCCGGCCCCCGCAACCAATCAAAAATAGCTGAATTCAACCAGTCCGCTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAAccc < 2:423870/136‑1 (MQ=11)
caTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTAAGGTGACGCGGGGTgg < 6:993307/105‑1 (MQ=255)
caTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTAAGGTGACGCGGGGTgg > 5:993307/1‑105 (MQ=255)
caTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATATAAATTAGATGTTATAAAGCTGTAAGGTGCGGCGGGGTTGCGCTGCCTGGGAGCTAGACGGGCTCATAACCCTaa > 7:136746/1‑140 (MQ=11)
caTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAAATTCATGTAAAAAACCAGTACGGTGACTAGGGGTGGAGCTGCATGGTAGGTAGTCGGTCTCATAACCCGaa > 7:131816/1‑140 (MQ=11)
tGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATGAATATTTGATGAAATAAACCAGAACGCTGACGCGGGGTGGAGCATACTTGTATCTCGTCGGGCTAAGAAccataa > 3:73878/1‑134 (MQ=11)
tGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAAATTGATGAAATAAAGCAGTACGGTGACGCGGGCTGGAGCAGACTGGTAGATCGTCGGGCTAATAACCCGaa > 3:73882/1‑138 (MQ=11)
tgCTCGTCGGTATAATAACCCGAATCTCGGCGGGTCAAATCCTGCCCGCGCAACCAATCATACATTGCTGAATAAAAGCAGTACTGTGACGCGGGGTGTAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGgtcgt < 7:66883/139‑1 (MQ=11)
cgCTCGTCGGGCTCATAACCCGAAGGTCGTCGGGGCAAATCCGGCCCCGGCCACCAATCATATATTGATGAATAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGgtcgt < 5:672702/139‑1 (MQ=11)
gCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGCGCAGCCTGGTAGCTCGTCGGGCTGATAACCCGAAGgtcg > 1:775001/1‑138 (MQ=255)
gCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTAGTCGGGCTCATAACCAGAATgtcg > 3:553663/1‑138 (MQ=255)
cgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTGAGGATAAAAAGCCCTACGGTGCAGAGGGGTGGCGCAGACTGGTTGATCTGCGGTCGGTTAACCCGAAGgtcgtgcgt > 7:197778/1‑136 (MQ=2)
tcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTTATGAAAGAAACCAGTACGCTGACGCTGGGTGGCGCAGCATTCTATGTACTCCGGCGCAAAACCCGAAGGTCGTCGGtta > 5:929813/1‑139 (MQ=11)
tcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGCCGCGGGGTGGAGCCGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGt > 3:180125/1‑138 (MQ=255)
tcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAATATTCATGAGATAAAGCAGTACGGTGACTCGGGGTTGAGCTTCGTGGTAGATGGTCGGTCTGAAAACCGGAAGGTGGTCGGt > 2:1046910/1‑138 (MQ=11)
ggCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAATATTTGATGTAAAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTGTAAACCCGACGGTGGTCGGttaa > 3:1072722/1‑136 (MQ=11)
cTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTTGATGAAAAAAAGCACTACGGTGCCGAGGGGTGGAGCAGGCTGGTAGCTAGGCCGGCTCATAACCCGAAGGTCGTGGGTTCtaa > 3:901878/1‑138 (MQ=11)
aCCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAAAAAAGCAGTACGGTGACTCGGGGTGGCGCAGCCTGGTAGCTCGTCGGGCTCATACCCAGAAGGTCCTCGGTTCAACTCCGGc > 3:895050/1‑138 (MQ=11)
cgGTTCAAATACGGCCCCCGCAACCAATCAAAATTTGATGAAATAAACCAGTACGGTGACTCGGGGTGGAGCAGCCTGGTAGATCGTCTGGCTCATAACCCGAAGGTCGTAGGAGCAAATACGGCTCCCGCacacatt > 1:341995/1‑132 (MQ=11)
ggTTCAAATCCGGCCCCCGCAACCAATCAATATTTGATGAAAAAAAGCACTACGGTGCAGAGGGGTGGAGCATGCTGGTTTCTAGACGGGCTCATCACCAGAAGGTCGGCGGTTACAATACCTCACCCCCGACCAAtt > 4:304634/1‑138 (MQ=2)
aaTCCGGCCCCCGCAATCAAACACATATTTATGAATATACGCAGTACTGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGaa < 7:34868/140‑1 (MQ=14)
ccccTCAATCAATCATACTTTTCTGTATTAATGCAGTACGGTGACGCGGGGTGTAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGa < 3:682964/138‑1 (MQ=14)
ccccGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTgg > 4:324840/1‑54 (MQ=255)
ccccGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTgg < 3:324840/54‑1 (MQ=255)
ccccGCAACCAATAAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATACCCGGAAGGTCGTCGGTTCTACACAGCCCCCCGCCACCAATTTAATAGAATGCTGa > 4:630356/1‑138 (MQ=14)
ccccGCAACCAATAAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGATAGTCGGGCTCTTACCCATAAGGTCGACGGTTCTAATCAGGCACCCGCAAACAAATAATTAGAAACCTGa > 4:630357/1‑138 (MQ=11)
cAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGCGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTGCAAATCCGGCCCCCGCATCCAATTAATTAGATTGCTGACAAAc > 4:273143/1‑138 (MQ=17)
cAACCAATCAAAATTTGATGAAAAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGCTTCAAATCAGTCCCCCGCAACCAATTTATTAGAATGCTGACAAAc > 1:895522/1‑138 (MQ=255)
aTCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAgc > 8:750351/1‑140 (MQ=255)
aTCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTAGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAACTCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAgc > 5:480318/1‑140 (MQ=255)
tCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAgca > 5:415142/1‑139 (MQ=255)
tCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCAAAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAgct > 8:626317/1‑140 (MQ=255)
gatgaAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAATTATTAGAATGCTGACAAACCGCAAACATGCTATAGGc > 7:173253/1‑140 (MQ=255)
|
CGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGC > NZ_CP022686/1546971‑1547238
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
