Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A28 F11 I0 R1 246 10296.8 9866480 98.4% 9708616 135.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 1,547,110 G→C 17.2% intergenic (+22/‑12) CIW80_RS07710 → / → CIW80_RS07715 tRNA‑Met/tRNA‑Met

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226861,547,1100GC17.2% 104.1 / 2.5 69intergenic (+22/‑12)CIW80_RS07710/CIW80_RS07715tRNA‑Met/tRNA‑Met
Reads supporting (aligned to +/- strand):  ref base G (34/21);  new base C (10/3);  total (45/24)
Fisher's exact test for biased strand distribution p-value = 3.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGCT  >  NZ_CP022686/1546971‑1547239
                                                                                                                                           |                                                                                                                                 
cgaaaCCTATTAAACTTTGATGAAGAAAACCACTTCGGTTACGCGGGGAGGAGCAGCATGGGAGCTCGTCGGGCTCAAAACCCGAAGTGCGTCTGTTCAAATCCGGCCCCCGAAACCAATCAAAATTTGATGAAATAAAg                                                                                                                                   <  8:786050/137‑1 (MQ=255)
cGCAACCAATTAAAATTTGATGAAGTAAAGGAGTACGGTGACGCGGTGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg                                                                                                                                   <  4:394920/140‑1 (MQ=255)
        aTTAAACTTTTATGCAGTAAAGGAGTCCGGTGACGCGGGGTGGAGCAGCCTGGTAGCGCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCTGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACgg                                                                                                                           <  1:942481/140‑1 (MQ=14)
          tAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAATTTTTAGGATAAAAACCAGTAAgg                                                                                                                           >  6:63571/1‑138 (MQ=14)
             atttgtatgaATTAACGCCGTACGCTGACGCGGGGTGGAGCAGCATGGTAGATCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAAACCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACTGTGAcg                                                                                                                      <  3:743719/134‑1 (MQ=14)
               tttGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGGTCAAATCCGGCCCCCGCCCCCAATAAATCTGTGTTGAAATAAACCAGTACGGTGCcgag                                                                                                                    >  8:1135477/1‑138 (MQ=14)
                 tgatgaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCACATCCGGCCCCCGCAACCAATCAAAATTTGATGATATAAACCAGTACGGTGACGCtgg                                                                                                                  >  1:63071/1‑140 (MQ=255)
                  gatgaAGTATAGCAGTACGGTGACGCGGGGGTGAGCAGACTGGTAGCTCGTCGGGCTCATAACCCGAATGTCGTCGGGTCAAATCCGGACTCCGCCACCAATCAAAAATTGATGAAATAAAGCAGTACGGTGACGCgggg                                                                                                                 <  3:491538/140‑1 (MQ=14)
                   atgaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGATCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAACTACGGCCCCCGCAACCAATGAAAAATTCATCTAAAAAAGCACTACGGTGACGCTGGGt                                                                                                                >  3:810119/1‑140 (MQ=14)
                       agaccaccAGTACGCTGACGCGGGGTGGAGCAGCATTGTAGCTCGTCTGGCTCATAAGCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGAAGAAATAAAGCAGTACGGTGACGCGGGGTGGag                                                                                                            <  7:641429/133‑1 (MQ=14)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTTGATGAAATAAAGCAGTAAGGTGACGCGGGGTGGCGCAGGATGGtt                                                                                                  >  2:858092/1‑139 (MQ=14)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAAATTGATGAAAGAAAGCAGTACGGTGCCTAGGGGTGGCGCTGGCTGGtg                                                                                                  >  7:1012647/1‑139 (MQ=14)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATATATAATTGATGAAAAAAACCACTACGGTGACGAGGGGTGGCGCAGAATGGtt                                                                                                  >  4:430334/1‑139 (MQ=11)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAATATTTTATGATAAAAAGCAGTACGGTGCCGCGGGGTGGAGCTGCATGGtt                                                                                                  >  1:105331/1‑139 (MQ=11)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTGTGGAAAAAAAGCACTACGGTGCATAGGGGTGGAGCAGACTGGtt                                                                                                  >  3:67699/1‑139 (MQ=14)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCACGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTa                                                                                                  >  7:258977/1‑140 (MQ=255)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCAGGACCCCGCAACCAATCAAAAATAAATGATAAAAAGCAGTACGGTGAAGAGGGGTGGAGCAGCATGGTa                                                                                                  >  7:3245/1‑140 (MQ=14)
                                   cGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCTGCCCCCGCAACCAATCAAAATTTTATGAAATAAAGCACTAAGGTGACGCGGGGTGGAGCAGCCTGGTAGc                                                                                                >  1:779252/1‑140 (MQ=255)
                                      tGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATATTGATCAAATAAAGCACTAAGGTGACGGGGGGTTGAGCAGACTTGTatgtag                                                                                             >  2:300852/1‑135 (MQ=14)
                                      tGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATCATAAAAAGCAGTACGGTGAGGAGGGGTGGCGCAGCGTGGTAgatag                                                                                             >  1:1267140/1‑136 (MQ=11)
                                        aCGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTTAGGATATAAAGCAGTACGGTGCCGCTTGGTGGAGCTGGCTGGTAGCtagtc                                                                                           >  8:592772/1‑140 (MQ=11)
                                         cgctGGGTGGAGCAGCAAGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTGCAAATCAGGCCCCCGCAACCAATCAAAAATTGATGAAATAAAGCAGTACCGTGACGCGGGGTGGAGCAGCCTGGTAGCtcgtcg                                                                                          <  3:544234/140‑1 (MQ=14)
                                         cgcgGTGGGGTGCAGCCTGGTTTCTCGTCGGGCCCATAAGCCGAAGGCGGGCGGTGCTAATCCTCCCCCCGCCATCAATCAACATTAGCTGAAATTTCCCATGACGCTGACGCGGGGTGGAGCAGCCTGGTAGCtcgtcg                                                                                          <  4:497847/140‑1 (MQ=2)
                                           cgGGGTGGAGAAGCCTTGTAGCTAGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCAGGCCCCCGCAAACAAACAAAATTTGATGAAAAAAAGCAGTCCGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCggg                                                                                        <  3:882049/140‑1 (MQ=11)
                                             gggTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGATATAAACCAGTACGGTGCGGCGGGGTGGCGCGTCATGGGAGGTAGTCggg                                                                                        >  6:995497/1‑138 (MQ=11)
                                                tGGAGCAGCATGGTACCGCGTCGGGCTCAATACCCTAAGGTAGTCGCTTCAAATCCGGCCCCCGCCAACAATAAAAATTTCATGAATTTAAGCAGTCCTGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCAt                                                                                   <  8:784708/140‑1 (MQ=11)
                                                  gAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg                                                                                                                                   >  2:632604/1‑90 (MQ=18)
                                                  gAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg                                                                                                                                   <  1:632604/90‑1 (MQ=255)
                                                  gAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGACCCCGCAACCAATATAAAATTGATGAAATAAACAAGTAAGGTGACTAGGGGTTGAGCAGCATTGGAGCTAGACGGGCTCATaa                                                                                 >  7:1014756/1‑140 (MQ=11)
                                                    gcagccTGGTCGCTCGTCTGGCTAATACGCCGAAGGGCTGCGCTTCATATACGGCCCCCGCAAGCAATCAACAATACATGAAATAAACCCTTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAAcc                                                                               <  1:116139/140‑1 (MQ=2)
                                                        cctGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGAcg                                                                                                                      <  4:708610/95‑1 (MQ=21)
                                                        caTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCACATCCGGCCCCCGCAACCAATCAATATTTGAGGAAATAAACCAGTACGGTGCAGCGGGGTGGAGCTGCATGGTAGCTAGTGCGGCTCAAAACCCGaa                                                                           >  2:1010199/1‑140 (MQ=11)
                                                             tAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTTATGAAATAAATCAGTACGGTGACGCTGGGTGGAGCAGAATGGTAGCTCCTCGGGCTCATACCCCTAAGttcg                                                                      >  1:1224318/1‑140 (MQ=11)
                                                             tAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAAAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTAGTCGGGCTCATAACCCGAAGgtcg                                                                      >  3:1039940/1‑140 (MQ=255)
                                                              ttgtcttcgGTCTAATAACCCGAATGTCTTAGGGGCAAATCCGTCCCCCTCAACCAATCATAATTTTATGAATTCAACCAGTACTGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGgtcgt                                                                     <  2:654501/134‑1 (MQ=11)
                                                              atgtcgtcgGTCTAATAACCCGAAGCTCGGCGGTGCAAATCACCCACCGTCAACCAATCAAATATTGATGAAATCACGCACTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGgtcgt                                                                     <  1:502111/137‑1 (MQ=11)
                                                              atcTCGTCGGACTCAAAACCCGAAGGGCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTAGCAGAAATCAAGCCGTACGGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGgtc                                                                       <  5:106036/136‑1 (MQ=11)
                                                              aGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAATTAAAGCAGTCCGGATACGCGGGGGTGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGgtc                                                                       <  5:344559/138‑1 (MQ=11)
                                                               gCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATATAATTTTGATGATAAAAAGCAGTACGCTGCCGCTGGCTGGAGCAGAGTGGTATCTTGTCGGGCGAATAACCCGAAGgtagtc                                                                    >  8:1029321/1‑140 (MQ=11)
                                                                cTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAAAAAACCAGTACGCTGCAGAGGGGTGGAGCAGCGTGGTAGATAGGCGGGCGCTTAACCCGAAGgtcgtcc                                                                   >  2:1201224/1‑139 (MQ=11)
                                                                  cgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGATATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGt                                                                 >  3:206283/1‑140 (MQ=37)
                                                                  cgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCggg                                                                                                                  <  3:568604/91‑1 (MQ=37)
                                                                  cgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATACCCAGAAGGTCGTCGGt                                                                 >  1:867958/1‑140 (MQ=12)
                                                                  cgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGAGGAAATAAAGCACTACGGTGCCGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGt                                                                 >  3:305458/1‑140 (MQ=255)
                                                                   gtctGGATCATAACCCGAATGTCGTCGGGTCAAATCCGGCCGCCTCAACCAATAAAAATTTCAAGAACTAACGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGtt                                                                <  1:409077/140‑1 (MQ=11)
                                                                    tcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATATAAAATATATGAAAGAAACCCCAACGGTGCCGCGGGGTGGCGCAGGCTTGTAGCTAGTCGGTCGCAACACCCGACAGTCGTCGGtta                                                               >  3:1076039/1‑139 (MQ=2)
                                                                     cgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGATATAAAGCAGTACGGTGCCGCGGGGTGGCGCAGCCTGGTAGCTCTGCGGGCGGATACCCCGAAGGTCGTCGGtt                                                                >  6:50613/1‑138 (MQ=11)
                                                                           cATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTGATGTAAAAAAGCAGTACGGTGCCGCGGGGTGGCGCAGGCTGGTAGATAGACGGTCGAATACCCAGAATGTCGTCGCTTaaaaaacg                                                        >  7:1149808/1‑136 (MQ=2)
                                                                             tAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTa                                                                                                                              <  7:240481/68‑1 (MQ=40)
                                                                             tAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTa                                                                                                                              >  8:240481/1‑68 (MQ=40)
                                                                                   gAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGag                                                                                                            <  4:543790/80‑1 (MQ=39)
                                                                                   gAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGag                                                                                                            >  3:543790/1‑80 (MQ=39)
                                                                                    aaGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCTAAATTAGTTCAGAAAAAGCAGTAAGGTGCCCAGGGGTGGAGCTGCCTGGTAGCTAGACCTGCTCATACCCAGAATGTCTTGGGTGCGAAAACGGCCACAGCa                                               >  8:807038/1‑140 (MQ=2)
                                                                                    aaGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTTATGAAATAAAGCAGTACGGTGAcg                                                                                                                      >  7:966193/1‑69 (MQ=255)
                                                                                    aaGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGAcg                                                                                                                      <  8:966193/69‑1 (MQ=40)
                                                                                    aaGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGgtcgt                                                                     >  4:794638/1‑118 (MQ=39)
                                                                                    aaGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGgtcgt                                                                     <  3:794638/118‑1 (MQ=39)
                                                                                    aaGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTGATCAAATAAACCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGTCTCTTAACCCGAAGGTCGTCCGTTCAAATCCGGcccccccc                                               >  3:1219369/1‑137 (MQ=11)
                                                                                      ggccggcgGGTCTAATCAGGCCCCCGCAACCAATCAACATTTCGTGAAATAAAGCCGTACTGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCa                                               <  5:384687/132‑1 (MQ=11)
                                                                                      ggTCGTCGGGTCAAAACAGGCCCCCGCAACCAATCAAACTTAGCTGTAATAACGCAGTACTGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAAc                                             <  1:651610/140‑1 (MQ=11)
                                                                                           tcgGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGAACGGTGACGCGGGGTGGAGCTGCCTGGTAGCTAGTCGGGCTCTTAACCCTAAGGTCGTCGGTTCAAATCGGGCCCCCGCAA‑CAAttt                                       >  4:450155/1‑140 (MQ=11)
                                                                                           tcgGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAAAAAAGCAGTACGGTGCCGCGGGGTGGAGCAGCCTGGTAGCTAGTCGGGCTCATCACCCGAAGGTCGTCGGTTCAAATACGGGCCCCGCGAGCAAtt                                        >  2:801134/1‑140 (MQ=11)
                                                                                           tcgGTTCAAATCCGGCCCCCGCAACCAATAAAATTTTGATGAAATAAAGCAGTACGGTGACGCTGGGTGGAGCAGGCTGGTAGCTAGTCGTGCTCATACCCCGAAGGTCGTCGGTGAAAATCCGGCGACCGCCACCAAtt                                        >  2:403459/1‑140 (MQ=11)
                                                                                            cgGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTTATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTTGTAGATCGTCGGGCTCATAACCCGAAGGTCGTGGGTTCAAATCCGGCCCCCGCAACCAAt                                         >  5:940323/1‑138 (MQ=11)
                                                                                             ggTTCAAATCCGGACCCCGCAACCAATAAAAATTTGATGAAATAAAGCAGAACGGTGAAGAGGGGTGGAGCAGCCTGGTTGCTAGTCGGGCTCATAACCTGAAGGTAGTAGGTTAAAATACGTCCCCCGCAACCAAtt                                        >  5:342925/1‑138 (MQ=255)
                                                                                                  aaaTCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGtt                                                                <  4:62067/109‑1 (MQ=40)
                                                                                                  aaaTCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGtt                                                                >  3:62067/1‑109 (MQ=40)
                                                                                                         gCCCCCGCAACCAATCAAATTTTGATGAAATAAAGCTCAACGGTGAAGCTGGGTGGCGCAGAGTGGTAGCTAGTCGGGCTCATAACCGGACGGTCGTCGCTTACAATCAGGGGACCCCAAGAAATTTAATAGAATACTGa                          >  4:777972/1‑140 (MQ=255)
                                                                                                         gCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGCCGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTgc                          >  3:119921/1‑139 (MQ=255)
                                                                                                              cGCAACCAATCAATATTTGATGAAATAAAGCAGTACGGTGAAGCGGGGTGGAGCAGCCTGGTAGATCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATAAGTCCCCCGCAACCAATTTATTAGAATGATGACAAAc                     >  8:1011735/1‑140 (MQ=17)
                                                                                                                       tCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAgct            >  2:455434/1‑140 (MQ=255)
                                                                                                                           atttttATGAATTTATGCAATACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCTCAACCAATTTATTAGAATGCTGACAAACCGCAAAgctgc          <  6:459712/136‑1 (MQ=18)
                                                                                                                                   gaAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGCt  >  5:1023054/1‑138 (MQ=255)
                                                                                                                                           |                                                                                                                                 
CGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGCT  >  NZ_CP022686/1546971‑1547239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A