Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F309 I0 R1
|
1697 |
197.2 |
6627756 |
95.7% |
6342762 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,365,283 |
G→T |
100% |
E271* (GAG→TAG) |
ycjM → |
alpha amylase catalytic domain family protein |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,365,283 | 0 | G | T | 99.3%
| 558.6
/ ‑5.7
| 190 | E271* (GAG→TAG) | ycjM | alpha amylase catalytic domain family protein |
| Reads supporting (aligned to +/- strand): ref base G (1/0); major base T (93/91); minor base A (5/0); total (99/91) |
| Fisher's exact test for biased strand distribution p-value = 6.01e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 192 total aligned reads displayed.
GCTGAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCGAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGGGCG > CP009273/1365139‑1365426
|
gCTGAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCtaga < 2:2722740/148‑1 (MQ=255)
gAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCa < 1:2451731/148‑1 (MQ=255)
gTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAAt < 2:937952/148‑1 (MQ=255)
tATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATg < 1:2750604/148‑1 (MQ=255)
tGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGtt < 2:205633/148‑1 (MQ=255)
cTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATa < 1:2807653/148‑1 (MQ=255)
cTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATa < 1:2807639/148‑1 (MQ=255)
tGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATaa < 1:1886705/148‑1 (MQ=255)
tGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATaa < 1:2729614/148‑1 (MQ=255)
gATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTTTTGATAAAGTTGCGCCACGTACAGTGATCATTAACAATAACAAAGTTACGCATAAAg > 1:2222816/1‑148 (MQ=255)
gATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGAGTATTGATAACTTTTCGCCACGTACAGTTATAATTAACTAGAACAAAGTTACGCAAAAAg > 1:561189/1‑148 (MQ=255)
gCCGTTGGCTTTATGTGGAGAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGac‑a < 2:3286614/148‑1 (MQ=255)
gCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGac‑a < 1:265819/148‑1 (MQ=255)
cGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGac‑aac < 1:1033449/148‑1 (MQ=255)
ttGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACAt > 2:2667706/1‑148 (MQ=255)
ttGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACAt < 2:2745854/148‑1 (MQ=255)
ttGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAAAGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACAt > 2:2489937/1‑148 (MQ=255)
gCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGc > 2:1353227/1‑148 (MQ=255)
cTTTATGTGGAAAGAGCCGGGAACAAGCTGAATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTAATTATAAAGTTTCCCCAGGTACAGTGATCAATACCTAGACCAATTTTACGCATAAATAA‑AAAATTTCt > 2:1691119/1‑148 (MQ=255)
tttATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCtt < 2:3171498/148‑1 (MQ=255)
ttATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTa < 1:2650133/148‑1 (MQ=255)
ttATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTa < 1:2650804/148‑1 (MQ=255)
tATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTAc < 1:2285602/148‑1 (MQ=255)
aaaGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGAGTATTGATAACGTTGCGCCCGGGACAGTGATCATTACCGAGACCAATGTTCCGCATAAAGAC‑AACATTGCTGACTTTGgcg > 1:910642/1‑148 (MQ=255)
agCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAgg < 2:127127/148‑1 (MQ=255)
agCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAgg < 2:126172/148‑1 (MQ=255)
ccGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGTTAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCg > 2:834534/1‑148 (MQ=255)
cGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCCGGTACAGTGCTCATTACCTAGACCAATTTTCCGCATAAATAC‑AACATTGCTTAATTTGGCGCAGGCGa > 1:2980780/1‑148 (MQ=255)
cGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGa < 2:2994515/148‑1 (MQ=255)
aGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAg > 2:3180249/1‑148 (MQ=255)
aGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAg > 1:2726096/1‑148 (MQ=255)
aGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAg < 2:2001532/148‑1 (MQ=255)
cTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGca < 1:2592348/148‑1 (MQ=255)
gCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGcaca < 1:3166428/148‑1 (MQ=255)
atccatcTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACata < 1:2124054/148‑1 (MQ=255)
atccatcTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACata < 1:2124131/148‑1 (MQ=255)
atccatcTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACata < 2:1454857/148‑1 (MQ=255)
ccatcTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATg < 2:1627520/148‑1 (MQ=255)
tcTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTAACTAGACCAATGTTACGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATtgtg > 2:1021350/1‑148 (MQ=255)
cTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATATCGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGgtgt < 2:406372/148‑1 (MQ=255)
cTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGgtgt < 1:1407682/148‑1 (MQ=255)
ggAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACGTTGGCGCCGGCGATGACGAAGCACAGATGGTGTAc > 2:2811329/1‑148 (MQ=255)
gAAAAAACACATCTGATTATCAAACTGTTACGGTCGAGTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTAcc > 1:3025398/1‑148 (MQ=255)
aaaaaCACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACAAATGGTGTACCAg > 2:507234/1‑148 (MQ=255)
aaaaCACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTTCGCCACGTACAGTGATCATTACCTATACCAAAGTTCCCCAAAAATAC‑AACAATTCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGt > 1:2921795/1‑148 (MQ=255)
aaaaCACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGt < 1:906469/148‑1 (MQ=255)
aaaaCACATCTGATTATCAAACTGTTACGGTCGATTATTGAAAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCCGt > 2:1475729/1‑148 (MQ=255)
aaaaCACATCTGAGTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGt < 2:1999329/148‑1 (MQ=255)
aaaCACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGtt < 1:355728/148‑1 (MQ=255)
aaCACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTtc < 2:1849747/148‑1 (MQ=255)
acacATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTTCGCCAGGTACAGTGATCATTTCCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTtct > 2:2581641/1‑148 (MQ=255)
acacATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTtct < 2:2837166/148‑1 (MQ=255)
cacaTCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGGTCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACCTATGGTGTACCAGTtctc > 2:3084137/1‑148 (MQ=255)
cacaTCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTtctc > 2:1548977/1‑148 (MQ=255)
cacaTCTGATTATCAAACTGTTACGGTCGAGTATTGATAACGTTGCGCCAGGTAAACTGATCATTAACAAGAACAATGTTCCCCATAAAGACAAACATT‑CTTACTTTTGCCCAGGCGATTACGAAGCACATATGGTGTACCAGttata > 1:677271/1‑145 (MQ=255)
caTCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGc < 2:1744359/148‑1 (MQ=255)
tCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTg < 2:401253/148‑1 (MQ=255)
tCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTg < 2:1285255/148‑1 (MQ=255)
tCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTAACTAGACCAATGTTCCGCATAAAGAC‑AACATTTCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTg > 2:1496464/1‑148 (MQ=255)
tATCAAACTGTTACGGTCGATTATTTATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATTGTGTACCAGTTCTCGCTGCCGCCa > 1:527870/1‑148 (MQ=255)
tATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATGATTACCTAGACCAATGTTCCGCATAAAGAA‑AACAATGCTTACTTTGGCGCAGGCGCTGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCa > 1:2404661/1‑148 (MQ=255)
tATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCa > 2:1086377/1‑148 (MQ=255)
cAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAA‑AACATTTCTTAATTTTGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTg > 1:2678201/1‑148 (MQ=255)
aCTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGTCGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGtg > 2:1218597/1‑148 (MQ=255)
aCTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGtg < 1:1967298/148‑1 (MQ=255)
tGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGtgct > 2:2438882/1‑148 (MQ=255)
cGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATg < 2:2846606/148‑1 (MQ=255)
tCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCgg > 2:1818204/1‑148 (MQ=255)
tCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCgg > 2:2666365/1‑148 (MQ=255)
attGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCaaa > 2:678050/1‑148 (MQ=255)
aTAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACa > 2:170235/1‑148 (MQ=255)
aTAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACa > 2:2113784/1‑148 (MQ=255)
tAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAg > 2:230297/1‑148 (MQ=255)
tAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAg > 2:2606280/1‑148 (MQ=255)
tAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAg > 1:1059568/1‑148 (MQ=255)
aaCGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGa > 2:463898/1‑148 (MQ=255)
gTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACg < 2:561189/148‑1 (MQ=255)
gTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACg < 1:62635/148‑1 (MQ=255)
gTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACg < 2:2222816/148‑1 (MQ=255)
cgcCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGa < 1:3013230/148‑1 (MQ=255)
aGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGgcg < 2:264033/148‑1 (MQ=255)
ggTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGgcgc > 2:2793006/1‑148 (MQ=255)
ggTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGgcgc > 2:1640071/1‑148 (MQ=255)
gTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCt > 2:2067134/1‑148 (MQ=255)
gTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCt < 1:1310237/148‑1 (MQ=255)
gTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCACAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCt < 1:2489942/148‑1 (MQ=255)
tACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCtt < 2:2981725/148‑1 (MQ=255)
tACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCtt < 1:2941450/148‑1 (MQ=255)
aCAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCttt > 2:2295261/1‑148 (MQ=255)
gATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCg > 1:101592/1‑148 (MQ=255)
gATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCg < 1:2112949/148‑1 (MQ=255)
gATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCg > 2:2197800/1‑148 (MQ=255)
gATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCg > 2:2101527/1‑148 (MQ=255)
aTCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGt > 2:733953/1‑148 (MQ=255)
cATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTgg > 1:287153/1‑148 (MQ=255)
cATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTgg > 1:3061664/1‑148 (MQ=255)
aTTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTggg > 1:1124035/1‑148 (MQ=255)
tACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGGgcg > 2:3124102/1‑148 (MQ=255)
tACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGGgcg > 2:711715/1‑148 (MQ=255)
tACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGNACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGGgcg > 1:1677893/1‑148 (MQ=255)
|
GCTGAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCGAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGGGCG > CP009273/1365139‑1365426
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCGAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGGGCGCAAAAC > CP009273/1365142‑1365432
|
GAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAAT < SRR19973070.2467769/150‑1 (MQ=60)
GTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGT < SRR19973070.1731834/150‑1 (MQ=60)
TATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTT < SRR19973070.2768273/150‑1 (MQ=60)
TATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTT < SRR19973070.2768244/150‑1 (MQ=60)
CCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAAAGTTTCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCA > SRR19973070.531526/1‑150 (MQ=60)
CTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAA < SRR19973070.2825802/150‑1 (MQ=60)
CTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAA < SRR19973070.2825788/150‑1 (MQ=60)
CTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAA < SRR19973070.2825708/150‑1 (MQ=60)
TGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAG < SRR19973070.2747210/150‑1 (MQ=60)
TGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAG < SRR19973070.1899513/150‑1 (MQ=60)
GATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC < SRR19973070.2216308/150‑1 (MQ=60)
GCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AAC < SRR19973070.267581/150‑1 (MQ=60)
GCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AAC < SRR19973070.267567/150‑1 (MQ=60)
CGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACAT < SRR19973070.1040758/150‑1 (MQ=60)
GTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAATAC‑AACATT > SRR19973070.1062177/1‑150 (MQ=60)
GTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATT < SRR19973070.2441362/150‑1 (MQ=60)
TTGGCTTTATGTGGAAAGAGCCGTGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTG < SRR19973070.2534121/150‑1 (MQ=60)
TTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACT < SRR19973070.2668052/150‑1 (MQ=60)
TTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACT < SRR19973070.2667530/150‑1 (MQ=60)
TTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACT < SRR19973070.2667378/150‑1 (MQ=60)
TATGTGGAAAGAGCCGGTAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTT < SRR19973070.2683807/150‑1 (MQ=60)
TATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTT < SRR19973070.2300804/150‑1 (MQ=60)
TATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTT < SRR19973070.2990163/150‑1 (MQ=60)
GGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGAGTATTGATAACGTTGCGCCCGGGACAGTGATCATTACCGAGACCAATGTTCCGCATAAAGAC‑AACATTGCTGACTTTGGCG > SRR19973070.917112/1‑150 (MQ=60)
AAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGAGTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACAATGCTTACTTTGGCGCAG > SRR19973070.52651/1‑150 (MQ=60)
GCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCCGGTACAGTGCTCATTACCTAGACCAATTTTCCGCATAAATAC‑AACATTGCTTAATTTGGCGCAGGCGA > SRR19973070.2999908/1‑150 (MQ=60)
CCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGAGTATTTATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACAATGCTTACTTTTGCGCAGGCGAT > SRR19973070.2844602/1‑150 (MQ=60)
CCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGAGTATTGATAACGTTGCGCCCGGGACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGGTTAATTTGGCGCAGGCGAT > SRR19973070.915727/1‑150 (MQ=60)
CGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATG < SRR19973070.2743824/150‑1 (MQ=60)
CGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATG < SRR19973070.1081378/150‑1 (MQ=60)
AACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGAGTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGA > SRR19973070.3000857/1‑150 (MQ=60)
CAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAG > SRR19973070.2743681/1‑150 (MQ=60)
CAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGGGATCAATACCAAGACCAAAGTTCCGCAAAAAGAC‑AACATTTCGTACGTTGGCGCAGGCGATtacgacc > SRR19973070.2743662/1‑143 (MQ=60)
CTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACA < SRR19973070.2609288/150‑1 (MQ=60)
GCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATA < SRR19973070.3186919/150‑1 (MQ=60)
GCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATA < SRR19973070.3186904/150‑1 (MQ=60)
ATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATG < SRR19973070.2138327/150‑1 (MQ=60)
ATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATG < SRR19973070.2138267/150‑1 (MQ=60)
ATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATG < SRR19973070.2138345/150‑1 (MQ=60)
ATACATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATG < SRR19973070.2138066/150‑1 (MQ=60)
CTGGAAAAAACACATCTGGTTATCAAACTGTTACGGTCGATTATTGATAAAGTTTCGCCAGGTAAAGTGATCATTAACTATACCAAAGTTCCGCATAAATAA‑AACATTTCTTACTTTGGCGCAGGCGATGACGAAGCACAAATGGTGTAA > SRR19973070.307604/1‑150 (MQ=60)
CTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTAC < SRR19973070.1417250/150‑1 (MQ=60)
TGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGAGTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACC > SRR19973070.3044670/1‑150 (MQ=60)
AAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTTCGCCACGTACAGTGATCATTACCTATACCAAAGTTCCCCAAAAATAC‑AACAATTCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGT > SRR19973070.2940661/1‑150 (MQ=60)
AAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAAAGTTCCGCATAAAGAC‑AACATTTCTTACTTTTGCGCAGGCGATGACGAAGCACATATGGTGTACCAGT > SRR19973070.2940611/1‑150 (MQ=60)
AAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAATAC‑AACATTTCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTT > SRR19973070.3311361/1‑150 (MQ=60)
AAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGAACAATGTTCCGCATAAATAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTT > SRR19973070.1664228/1‑150 (MQ=60)
AAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTC < SRR19973070.912904/150‑1 (MQ=60)
AAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCT < SRR19973070.358313/150‑1 (MQ=60)
AACACATCTGATTATCAAACTGTTACGGTCGAGTATTTATAAAGTTGCGCCAGGTAAAGTGATAATTACCAAGAACAATTTTACGCATAAAGAC‑AACAATGCTTAATTTTTCGCAGGCGATGACGAACCACAAATGGTGTAacacttcta > SRR19973070.682213/1‑141 (MQ=60)
AACACATCTGATTATCAAACTGTTACGGTCGAGTATTGATAACGTTGCGCCAGGTAAACTGATCATTAACAAGAACAATGTTCCCCATAAAGACAAACATT‑CTTACTTTTGCCCAGGCGATTACGAAGCACATATGGTGTACCAGTTata > SRR19973070.682100/1‑147 (MQ=60)
CTGATTATCAAACTGTTACGGTCGATTTTTTATAAAGTTTCGCCAGGTACAGTGATACTTACCAAGACCAAAGTTCCGCATAAAGAC‑AAAATTGCTTAATTTGGGGCAGGCGATGACGAAGCACAAATTGTGTACCAGTTatagcggccc > SRR19973070.2341191/1‑140 (MQ=60)
GATTATCAAACTGTTACGGTCGATTTTTGATAACCTTGCGCCAGGTAACGTGATAATTACCAAGAACAAAGTTCCGCCAAAAGAC‑AAAAATTCTTACTTTGGCGCAGGCGCTTAAGAAGCACAAATGGTGTACCActtctagcttccccc > SRR19973070.121829/1‑135 (MQ=41)
ATTATCAAACTGTTACGGTCGATTATTTATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATTGTGTACCAGTTCTCGCTGCCGCCA > SRR19973070.531435/1‑150 (MQ=60)
ATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATGATTACCTAGACCAATGTTCCGCATAAAGAA‑AACAATGCTTACTTTGGCGCAGGCGCTGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCA > SRR19973070.2420520/1‑150 (MQ=60)
TTATCAAACTGTTACGGTCGATTATTTTTAAAGTTTCGCCAGGTACAGTGTTCATTAACTAGACCAATGTTCCGCATTAAGAC‑AAAATTGCTTACTTTTGCGCAGGGGGTGTCGAAGCACATATGGTGTTCCAGTTGTCGCTGGCGCCAC > SRR19973070.2348983/1‑150 (MQ=60)
TATCAAACTGTTACGGTCGAGTATTGATAACGTTGCGCCAGGTACAGTGATAATTACCGATACCAAATTTACGCATAAAGAC‑AACATTGCGTACTTTTGCGCAGGCGATGACCAAGCACATATGGTGTAACAGTTCTCGCTGCCGCCACA > SRR19973070.1731983/1‑150 (MQ=60)
ATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAA‑AACATTTCTTAATTTTGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTG > SRR19973070.2695588/1‑150 (MQ=60)
ACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCT < SRR19973070.1980583/150‑1 (MQ=60)
ACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCT < SRR19973070.1980975/150‑1 (MQ=60)
CGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATTACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCG > SRR19973070.1351248/1‑150 (MQ=60)
GATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCA > SRR19973070.1317517/1‑150 (MQ=60)
GATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAG > SRR19973070.1067002/1‑150 (MQ=60)
GATAACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAG < SRR19973070.3033322/150‑1 (MQ=60)
AACGTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAAC > SRR19973070.1936039/1‑150 (MQ=60)
GTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTT < SRR19973070.63338/150‑1 (MQ=60)
GTTGCGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTT < SRR19973070.63413/150‑1 (MQ=60)
CGCCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGG < SRR19973070.3032457/150‑1 (MQ=60)
CCAGGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCG > SRR19973070.2640224/1‑150 (MQ=60)
GGTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTT > SRR19973070.2942871/1‑150 (MQ=60)
GTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTT < SRR19973070.1319330/150‑1 (MQ=60)
GTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCACAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTT < SRR19973070.2506102/150‑1 (MQ=60)
GTACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCACAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTT < SRR19973070.2506107/150‑1 (MQ=60)
TACAGTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTG < SRR19973070.2960404/150‑1 (MQ=60)
GTGATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCG > SRR19973070.102562/1‑150 (MQ=60)
GATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTG < SRR19973070.2127116/150‑1 (MQ=60)
ATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGG > SRR19973070.3081266/1‑150 (MQ=60)
ATCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGG > SRR19973070.289081/1‑150 (MQ=60)
TCATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGGG > SRR19973070.1131752/1‑150 (MQ=60)
ATTACCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGNACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGGGCG > SRR19973070.1689379/1‑150 (MQ=60)
CCTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGGGCGCAAA > SRR19973070.330108/1‑150 (MQ=60)
CTAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGGGCGCAAAA > SRR19973070.3173891/1‑150 (MQ=60)
TAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGGGCGCAAAAC > SRR19973070.385016/1‑150 (MQ=60)
|
GAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCGAGACCAATGTTCCGCATAAAGAC‑AACATTGCTTACTTTGGCGCAGGCGATGACGAAGCACATATGGTGTACCAGTTCTCGCTGCCGCCACTGGTGCTGCATGCGGTGCAAAAACAGAACGTTGAGGCGCTTTGTGCGTGGGCGCAAAAC > CP009273/1365142‑1365432
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |