breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	4,594,167	0	C	T	64.7%	‑3.4 / 11.7	17	S64F (TCT→TTT)	bglJ	DNA‑binding transcriptional activator BglJ
*	NZ_CP009273	2,669,465	0	C	A	60.0%	0.1 / 13.3	10	L240F (TTG→TTT)	yphD	ABC transporter permease
*	NZ_CP009273	2,319,929	0	T	G	58.8%	3.5 / 18.5	17	G114G (GGT→GGG)	atoB	acetyl‑CoA acetyltransferase
*	NZ_CP009273	4,329,945	0	T	G	58.8%	10.7 / 17.1	17	T132P (ACC→CCC)	adiA	arginine decarboxylase
*	NZ_CP009273	333,793	0	A	G	57.1%	11.0 / 16.4	14	G435G (GGA→GGG)	fdrA	acyl‑CoA synthetase FdrA
*	NZ_CP009273	4,292,475	0	T	G	55.0%	16.6 / 19.2	20	T141P (ACC→CCC)	mdtO	multidrug efflux transporter permease subunit MdtO
*	NZ_CP009273	349,993	0	T	G	53.8%	8.0 / 12.2	13	V526G (GTT→GGT)	prpE	propionate‑‑CoA ligase
*	NZ_CP009273	416,478	0	A	C	53.8%	7.0 / 14.0	13	T13P (ACC→CCC)	proY	proline‑specific permease ProY
*	NZ_CP009273	807,177	0	T	G	53.8%	8.4 / 13.2	13	V67G (GTG→GGG)	bioC	malonyl‑ACP O‑methyltransferase BioC
*	NZ_CP009273	1,980,476	0	A	C	53.8%	12.6 / 14.9	13	Y24S (TAC→TCC)	ftnB	non‑heme ferritin‑like protein
*	NZ_CP009273	276,800	0	A	C	52.9%	14.9 / 19.7	17	Y299D (TAT→GAT)	yagA	IS481‑like element ISEc19 family transposase
*	NZ_CP009273	4,558,321	0	T	G	52.9%	9.5 / 18.8	17	T6P (ACC→CCC)	mdtM	multidrug efflux MFS transporter MdtM
*	NZ_CP009273	765,675	0	A	C	52.6%	17.1 / 21.1	19	T748P (ACC→CCC)	mngB	mannosylglycerate hydrolase
*	NZ_CP009273	2,294,730	1	.	G	33.3%	8.9 / 13.9	12	coding (1503/2487 nt)	napA	periplasmic nitrate reductase subunit alpha