breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 49,910 | T→G | W30G (TGG→GGG) | folA → | type 3 dihydrofolate reductase |
RA | 455,677 | A→T | D445V (GAT→GTT) | lon → | endopeptidase La |
RA | 1,613,393 | A→T | D6V (GAT→GTT) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
RA | 3,511,988 | C→A | E146* (GAG→TAG) | aroK ← | shikimate kinase AroK |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 255909 | 255930 | 22 | 3 [1] | [1] 2 | phoE/proB | phosphoporin PhoE/glutamate 5‑kinase |
* | * | ÷ | NZ_CP009273 | 356981 | 357569 | 589 | 3 [0] | [1] 2 | lacA | galactoside O‑acetyltransferase |
* | * | ÷ | NZ_CP009273 | 380412 | 380422 | 11 | 3 [1] | [0] 3 | BW25113_RS01880/tauA | PIG‑L family deacetylase/taurine ABC transporter substrate‑binding protein |
* | * | ÷ | NZ_CP009273 | 396174 | 396179 | 6 | 2 [0] | [1] 3 | ddlA | D‑alanine‑‑D‑alanine ligase |
* | * | ÷ | NZ_CP009273 | 396637 | 396679 | 43 | 2 [1] | [1] 2 | [BW25113_RS25915] | [BW25113_RS25915] |
* | * | ÷ | NZ_CP009273 | 559279 | 559319 | 41 | 3 [1] | [1] 2 | [sfmF]–[fimZ] | [sfmF],[fimZ] |
* | * | ÷ | NZ_CP009273 | 610518 | 610562 | 45 | 2 [1] | [1] 2 | entF | enterobactin non‑ribosomal peptide synthetase EntF |
* | * | ÷ | NZ_CP009273 | 613529 | 613587 | 59 | 2 [1] | [1] 3 | entF/wzz(fepE) | enterobactin non‑ribosomal peptide synthetase EntF/LPS O‑antigen length regulator Wzz(fepE) |
* | * | ÷ | NZ_CP009273 | 647495 | 647621 | 127 | 2 [0] | [1] 2 | citC/dpiB | [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB |
* | * | ÷ | NZ_CP009273 | 703461 | 703534 | 74 | 2 [1] | [1] 2 | glnS/chiP | glutamine‑‑tRNA ligase/chitoporin |
* | * | ÷ | NZ_CP009273 | 716393 | 716519 | 127 | 2 [1] | [1] 3 | [kdpE] | [kdpE] |
* | * | ÷ | NZ_CP009273 | 719703 | 719711 | 9 | 2 [0] | [1] 2 | kdpD | two‑component system sensor histidine kinase KdpD |
* | * | ÷ | NZ_CP009273 | 724884 | 724894 | 11 | 4 [1] | [1] 2 | ybfA/rhsC | YbfA family protein/rhs element protein RhsC |
* | * | ÷ | NZ_CP009273 | 725085 | 725094 | 10 | 2 [0] | [1] 2 | rhsC | rhs element protein RhsC |
* | * | ÷ | NZ_CP009273 | 744181 | 744192 | 12 | 3 [0] | [1] 2 | ybgO | fimbrial protein |
* | * | ÷ | NZ_CP009273 | 835559 | 835569 | 11 | 3 [0] | [0] 7 | fiu | catecholate siderophore receptor Fiu |
* | * | ÷ | NZ_CP009273 | 836233 | 836272 | 40 | 2 [0] | [1] 2 | fiu | catecholate siderophore receptor Fiu |
* | * | ÷ | NZ_CP009273 | 839240 | 839268 | 29 | 2 [0] | [1] 2 | ybiO | mechanosensitive channel protein |
* | * | ÷ | NZ_CP009273 | 903012 | 903039 | 28 | 2 [1] | [1] 2 | ybjT | SDR family oxidoreductase |
* | * | ÷ | NZ_CP009273 | 950091 | 950254 | 164 | 3 [1] | [1] 2 | focA/ycaO | formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO |
* | * | ÷ | NZ_CP009273 | 982718 | 982811 | 94 | 2 [0] | [1] 2 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 982903 | 982948 | 46 | 2 [1] | [1] 2 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 989290 | 989367 | 78 | 4 [1] | [1] 2 | ssuB | aliphatic sulfonates ABC transporter ATP‑binding protein |
* | * | ÷ | NZ_CP009273 | 991195 | 991195 | 1 | 2 [0] | [0] 3 | ssuD | FMNH2‑dependent alkanesulfonate monooxygenase |
* | * | ÷ | NZ_CP009273 | 993139 | 993194 | 56 | 2 [1] | [1] 2 | ssuE/elfA | NADPH‑dependent FMN reductase/fimbrial protein |
* | * | ÷ | NZ_CP009273 | 1059487 | 1059497 | 11 | 2 [0] | [0] 2 | [yccE] | [yccE] |
* | * | ÷ | NZ_CP009273 | 1068638 | 1068683 | 46 | 2 [1] | [1] 2 | rutA | pyrimidine utilization protein A |
* | * | ÷ | NZ_CP009273 | 1073959 | 1074017 | 59 | 3 [1] | [1] 2 | putA | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1074889 | 1074949 | 61 | 2 [1] | [1] 2 | putP | sodium/proline symporter PutP |
* | * | ÷ | NZ_CP009273 | 1088275 | 1088300 | 26 | 2 [1] | [1] 2 | pgaA/dgcT | poly‑beta‑1,6 N‑acetyl‑D‑glucosamine export porin PgaA/GGDEF domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1123979 | 1124034 | 56 | 2 [1] | [1] 2 | murJ | murein biosynthesis integral membrane protein MurJ |
* | * | ÷ | NZ_CP009273 | 1128349 | 1128383 | 35 | 2 [1] | [1] 3 | flgE | flagellar hook protein FlgE |
* | * | ÷ | NZ_CP009273 | 1164381 | 1164451 | 71 | 3 [1] | [1] 3 | comR/bhsA | TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA |
* | * | ÷ | NZ_CP009273 | 1165661 | 1165750 | 90 | 3 [1] | [1] 2 | ldtC | L,D‑transpeptidase LdtC |
* | * | ÷ | NZ_CP009273 | 1172286 | 1172393 | 108 | 2 [1] | [1] 2 | lolD | lipoprotein‑releasing ABC transporter ATP‑binding protein LolD |
* | * | ÷ | NZ_CP009273 | 1172673 | 1172693 | 21 | 2 [1] | [0] 2 | lolD | lipoprotein‑releasing ABC transporter ATP‑binding protein LolD |
* | * | ÷ | NZ_CP009273 | 1207775 | 1207803 | 29 | 3 [1] | [1] 4 | BW25113_RS25985/BW25113_RS25535 | protein YmgK/hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1209653 | 1209668 | 16 | 2 [0] | [1] 3 | bluR/bluF | DNA‑binding transcriptional repressor BluR/blue light‑responsive regulator BluF |
* | * | ÷ | NZ_CP009273 | 1212148 | 1212194 | 47 | 2 [1] | [1] 3 | ariR/BW25113_RS06060 | biofilm/acid‑resistance regulator AriR/hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1215656 | 1215735 | 80 | 2 [0] | [1] 2 | BW25113_RS25990 | autotransporter outer membrane beta‑barrel domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1216670 | 1216696 | 27 | 4 [1] | [1] 2 | BW25113_RS25990 | autotransporter outer membrane beta‑barrel domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1225649 | 1225748 | 100 | 3 [1] | [0] 2 | hlyE | hemolysin HlyE |
* | * | ÷ | NZ_CP009273 | 1225926 | 1226005 | 80 | 2 [1] | [1] 3 | hlyE/umuD | hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit |
* | * | ÷ | NZ_CP009273 | 1229277 | 1229311 | 35 | 2 [1] | [1] 3 | nhaB | Na(+)/H(+) antiporter NhaB |
* | * | ÷ | NZ_CP009273 | 1241775 | 1241842 | 68 | 2 [1] | [1] 3 | treA | alpha,alpha‑trehalase |
* | * | ÷ | NZ_CP009273 | 1255533 | 1255550 | 18 | 2 [0] | [1] 2 | dauA | C4‑dicarboxylic acid transporter DauA |
* | * | ÷ | NZ_CP009273 | 1259560 | 1259584 | 25 | 2 [1] | [1] 3 | hemA | glutamyl‑tRNA reductase |
* | * | ÷ | NZ_CP009273 | 1290368 | 1290370 | 3 | 2 [0] | [0] 2 | BW25113_RS06460 | IS4 family transposase |
* | * | ÷ | NZ_CP009273 | 1299537 | 1299547 | 11 | 2 [0] | [1] 3 | oppD | murein tripeptide/oligopeptide ABC transporter ATP‑binding protein OppD |
* | * | ÷ | NZ_CP009273 | 1301384 | 1301399 | 16 | 2 [1] | [0] 3 | yciU | HI1450 family dsDNA‑mimic protein |
* | * | ÷ | NZ_CP009273 | 1310172 | 1310216 | 45 | 2 [1] | [1] 2 | yciG | general stress protein |
* | * | ÷ | NZ_CP009273 | 1318468 | 1318506 | 39 | 2 [0] | [1] 2 | yciO | L‑threonylcarbamoyladenylate synthase |
* | * | ÷ | NZ_CP009273 | 1320837 | 1320905 | 69 | 2 [1] | [0] 2 | [yciQ] | [yciQ] |
* | * | ÷ | NZ_CP009273 | 1327710 | 1327782 | 73 | 2 [0] | [1] 2 | topA | type I DNA topoisomerase |
* | * | ÷ | NZ_CP009273 | 1357079 | 1357089 | 11 | 3 [1] | [1] 3 | puuC | aldehyde dehydrogenase PuuC |
* | * | ÷ | NZ_CP009273 | 1357142 | 1357180 | 39 | 3 [1] | [0] 2 | puuC | aldehyde dehydrogenase PuuC |
* | * | ÷ | NZ_CP009273 | 1357231 | 1357254 | 24 | 2 [0] | [1] 2 | puuC | aldehyde dehydrogenase PuuC |
* | * | ÷ | NZ_CP009273 | 1374115 | 1374146 | 32 | 2 [1] | [0] 2 | ycjT | kojibiose phosphorylase |
* | * | ÷ | NZ_CP009273 | 1375454 | 1375470 | 17 | 2 [1] | [1] 2 | BW25113_RS06905 | ABC transporter ATP‑binding protein |
* | * | ÷ | NZ_CP009273 | 1379347 | 1379400 | 54 | 2 [1] | [1] 2 | ycjX | YcjX family protein |
* | * | ÷ | NZ_CP009273 | 1394694 | 1394730 | 37 | 2 [1] | [1] 2 | abgT | p‑aminobenzoyl‑glutamate transporter |
* | * | ÷ | NZ_CP009273 | 1412911 | 1412937 | 27 | 2 [1] | [1] 2 | [sieB] | [sieB] |
* | * | ÷ | NZ_CP009273 | 1423672 | 1423778 | 107 | 2 [1] | [1] 2 | stfR | prophage tail fiber N‑terminal domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1434754 | 1434782 | 29 | 2 [0] | [1] 2 | nifJ | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1437566 | 1437582 | 17 | 2 [1] | [1] 2 | ydbH | YdbH family protein |
* | * | ÷ | NZ_CP009273 | 1459390 | 1459519 | 130 | 2 [1] | [1] 2 | BW25113_RS25580 | BW25113_RS25580 |
* | * | ÷ | NZ_CP009273 | 1500963 | 1501015 | 53 | 2 [1] | [1] 2 | [sutR] | [sutR] |
* | * | ÷ | NZ_CP009273 | 1533651 | 1533670 | 20 | 2 [1] | [1] 3 | narZ | nitrate reductase Z subunit alpha |
* | * | ÷ | NZ_CP009273 | 1539488 | 1539496 | 9 | 2 [0] | [1] 2 | BW25113_RS07710 | leucine‑rich repeat domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1540202 | 1540217 | 16 | 3 [1] | [0] 2 | yddL | porin |
* | * | ÷ | NZ_CP009273 | 1540260 | 1540276 | 17 | 2 [0] | [1] 2 | yddL | porin |
* | * | ÷ | NZ_CP009273 | 1540404 | 1540433 | 30 | 2 [1] | [1] 2 | yddL/yddG | porin/aromatic amino acid efflux DMT transporter YddG |
* | * | ÷ | NZ_CP009273 | 1592538 | 1592553 | 16 | 2 [1] | [1] 2 | BW25113_RS07915/lsrK | ECSE_1600 family autotransporter/autoinducer‑2 kinase |
* | * | ÷ | NZ_CP009273 | 1599851 | 1599942 | 92 | 2 [1] | [1] 2 | lsrB | autoinducer 2 ABC transporter substrate‑binding protein LsrB |
* | * | ÷ | NZ_CP009273 | 1618908 | 1619008 | 101 | 2 [0] | [1] 2 | ydeI/ydeJ | YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase |
* | * | ÷ | NZ_CP009273 | 1631969 | 1632120 | 152 | 2 [1] | [1] 2 | [gnsB] | [gnsB] |
* | * | ÷ | NZ_CP009273 | 1652253 | 1652350 | 98 | 2 [1] | [1] 2 | [ynfE] | [ynfE] |
* | * | ÷ | NZ_CP009273 | 1690592 | 1690596 | 5 | 2 [1] | [0] 2 | uidA/uidR | beta‑glucuronidase/DNA‑binding transcriptional regulator UidR |
* | * | ÷ | NZ_CP009273 | 1692823 | 1692852 | 30 | 2 [1] | [1] 2 | malI | mal regulon transcriptional regulator MalI |
* | * | ÷ | NZ_CP009273 | 1734591 | 1734601 | 11 | 2 [0] | [1] 4 | punC | purine nucleoside transporter PunC |
* | * | ÷ | NZ_CP009273 | 1748945 | 1749036 | 92 | 2 [1] | [1] 2 | ydhY/fumD | ferredoxin‑like protein/fumarate hydratase FumD |
* | * | ÷ | NZ_CP009273 | 1764342 | 1764390 | 49 | 2 [1] | [1] 2 | ydiK | AI‑2E family transporter YdiK |
* | * | ÷ | NZ_CP009273 | 1774885 | 1774903 | 19 | 2 [0] | [0] 2 | ydiR | electron transfer flavoprotein subunit alpha |
* | * | ÷ | NZ_CP009273 | 1781500 | 1781510 | 11 | 2 [0] | [0] 2 | ppsA/ppsR | phosphoenolpyruvate synthase/posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR |
* | * | ÷ | NZ_CP009273 | 1797634 | 1797639 | 6 | 3 [1] | [0] 2 | espL1 | type III secretion system effector EspL1 |
* | * | ÷ | NZ_CP009273 | 1807423 | 1807440 | 18 | 2 [1] | [0] 2 | BW25113_RS09050/cedA | hypothetical protein/cell division activator CedA |
* | * | ÷ | NZ_CP009273 | 1811861 | 1811870 | 10 | 5 [0] | [1] 2 | celF | 6‑phospho‑beta‑glucosidase |
* | * | ÷ | NZ_CP009273 | 1836378 | 1836398 | 21 | 2 [1] | [1] 2 | [ynjH] | [ynjH] |
* | * | ÷ | NZ_CP009273 | 1888805 | 1888863 | 59 | 2 [1] | [1] 3 | [yoaH] | [yoaH] |
* | * | ÷ | NZ_CP009273 | 1890752 | 1890780 | 29 | 4 [1] | [1] 2 | nudL | CoA pyrophosphatase |
* | * | ÷ | NZ_CP009273 | 1951926 | 1951977 | 52 | 2 [1] | [1] 3 | torY | NapC/NirT family cytochrome c |
* | * | ÷ | NZ_CP009273 | 1973023 | 1973047 | 25 | 3 [1] | [1] 2 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
* | * | ÷ | NZ_CP009273 | 2001095 | 2001105 | 11 | 2 [0] | [0] 3 | amyA | alpha‑amylase |
* | * | ÷ | NZ_CP009273 | 2011656 | 2011663 | 8 | 2 [1] | [1] 3 | fliJ | flagellar export protein FliJ |
* | * | ÷ | NZ_CP009273 | 2027317 | 2027453 | 137 | 6 [1] | [1] 6 | drpB/ompC | cell division protein DrpB/porin OmpC |
* | * | ÷ | NZ_CP009273 | 2050725 | 2050751 | 27 | 3 [1] | [0] 2 | yeeN | YebC/PmpR family DNA‑binding transcriptional regulator |
* | * | ÷ | NZ_CP009273 | 2062035 | 2062090 | 56 | 2 [1] | [1] 2 | BW25113_RS10415/BW25113_RS24005 | IS5‑like element IS5 family transposase/TonB‑dependent receptor plug domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2097136 | 2097183 | 48 | 2 [1] | [1] 2 | wbbK | glycosyltransferase family 1 protein |
* | * | ÷ | NZ_CP009273 | 2097471 | 2097543 | 73 | 3 [1] | [1] 3 | wbbK | glycosyltransferase family 1 protein |
* | * | ÷ | NZ_CP009273 | 2099654 | 2099731 | 78 | 2 [1] | [1] 2 | wzy | O16 family O‑antigen polymerase |
* | * | ÷ | NZ_CP009273 | 2102573 | 2102598 | 26 | 2 [0] | [0] 3 | wzx | O16 family O‑antigen flippase |
* | * | ÷ | NZ_CP009273 | 2185819 | 2185829 | 11 | 3 [1] | [0] 2 | yehD/yehE | fimbrial protein/YehE family protein |
* | * | ÷ | NZ_CP009273 | 2217688 | 2217700 | 13 | 2 [1] | [1] 2 | pbpG | D‑alanyl‑D‑alanine endopeptidase |
* | * | ÷ | NZ_CP009273 | 2254510 | 2254532 | 23 | 2 [1] | [0] 2 | fruA | PTS fructose transporter subunit IIBC |
* | * | ÷ | NZ_CP009273 | 2286424 | 2286478 | 55 | 2 [1] | [0] 2 | [dsbE]–[ccmF] | [dsbE],[ccmF] |
* | * | ÷ | NZ_CP009273 | 2330355 | 2330362 | 8 | 3 [0] | [0] 4 | gyrA | DNA topoisomerase (ATP‑hydrolyzing) subunit A |
* | * | ÷ | NZ_CP009273 | 2337801 | 2337886 | 86 | 2 [1] | [1] 3 | yfaL/nrdA | AIDA‑I family autotransporter adhesin YfaL/EhaC/ribonucleoside‑diphosphate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 2345589 | 2345599 | 11 | 5 [0] | [1] 3 | glpT | glycerol‑3‑phosphate transporter |
* | * | ÷ | NZ_CP009273 | 2462811 | 2462819 | 9 | 2 [0] | [0] 2 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2463143 | 2463190 | 48 | 2 [0] | [1] 5 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2463621 | 2463748 | 128 | 2 [1] | [0] 2 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2491902 | 2491920 | 19 | 3 [1] | [1] 2 | alaC/ypdA | alanine transaminase/two‑component system sensor histidine kinase YpdA |
* | * | ÷ | NZ_CP009273 | 2505220 | 2505258 | 39 | 2 [0] | [1] 2 | mntH | Nramp family divalent metal transporter |
* | * | ÷ | NZ_CP009273 | 2511705 | 2511723 | 19 | 2 [1] | [1] 2 | [BW25113_RS12505] | [BW25113_RS12505] |
* | * | ÷ | NZ_CP009273 | 2563823 | 2563847 | 25 | 2 [1] | [1] 2 | eutE | aldehyde dehydrogenase EutE |
* | * | ÷ | NZ_CP009273 | 2599362 | 2599407 | 46 | 2 [1] | [1] 2 | hyfD | hydrogenase 4 subunit HyfD |
* | * | ÷ | NZ_CP009273 | 2682717 | 2682784 | 68 | 2 [1] | [1] 2 | qseG | two‑component system QseEF‑associated lipoprotein QseG |
* | * | ÷ | NZ_CP009273 | 2694318 | 2694331 | 14 | 3 [1] | [1] 2 | acpS | holo‑ACP synthase |
* | * | ÷ | NZ_CP009273 | 2765245 | 2765283 | 39 | 2 [1] | [0] 2 | BW25113_RS13755/BW25113_RS26200 | hypothetical protein/arsenate reductase |
* | * | ÷ | NZ_CP009273 | 2766442 | 2766468 | 27 | 2 [1] | [1] 2 | BW25113_RS13765 | arsenic transporter |
* | * | ÷ | NZ_CP009273 | 2779433 | 2779435 | 3 | 2 [1] | [0] 2 | BW25113_RS13825/BW25113_RS26005 | tRNA‑Ile/alpha‑amylase family glycosyl hydrolase |
* | * | ÷ | NZ_CP009273 | 2975699 | 2975709 | 11 | 2 [1] | [1] 3 | araE/kduD | arabinose‑proton symporter AraE/2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase KduD |
* | * | ÷ | NZ_CP009273 | 3247097 | 3247151 | 55 | 2 [1] | [0] 2 | yhaJ | DNA‑binding transcriptional regulator YhaJ |
* | * | ÷ | NZ_CP009273 | 3262610 | 3262641 | 32 | 2 [0] | [1] 2 | yhaC | YhaC family protein |
* | * | ÷ | NZ_CP009273 | 3378658 | 3378770 | 113 | 2 [1] | [1] 2 | argR/yhcN | transcriptional regulator ArgR/peroxide/acid stress response protein YhcN |
* | * | ÷ | NZ_CP009273 | 3763191 | 3763263 | 73 | 2 [0] | [1] 3 | BW25113_RS26240/yibH | Imm57 family immunity protein/HlyD family secretion protein |
* | * | ÷ | NZ_CP009273 | 3792825 | 3792854 | 30 | 2 [1] | [1] 2 | waaZ | 3‑deoxy‑D‑manno‑oct‑2‑ulosonate III transferase WaaZ |
* | * | ÷ | NZ_CP009273 | 3798330 | 3798404 | 75 | 3 [1] | [1] 2 | rfaS | LPS core biosynthesis protein RfaS |
* | * | ÷ | NZ_CP009273 | 3979644 | 3979660 | 17 | 2 [1] | [1] 2 | aslA/hemY | arylsulfatase AslA/protoheme IX biogenesis protein HemY |
* | * | ÷ | NZ_CP009273 | 4241422 | 4241432 | 11 | 4 [1] | [0] 2 | BW25113_RS20970 | SopA family protein |
* | * | ÷ | NZ_CP009273 | 4250365 | 4250380 | 16 | 2 [1] | [0] 3 | BW25113_RS21020 | DUF2713 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 4294342 | 4294369 | 28 | 5 [1] | [0] 2 | ytcA/yjcS | YtcA family lipoprotein/alkyl sulfatase YjcS |
* | * | ÷ | NZ_CP009273 | 4316729 | 4316750 | 22 | 2 [1] | [1] 4 | yjdM/crfC | zinc ribbon domain‑containing protein YjdM/clamp‑binding protein CrfC |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | = 287112 | NA (NA) | 15 (1.130) | 11/168 | 0.2 | 93.8% | intergenic (‑55/‑99) | BW25113_RS01405/BW25113_RS01410 | IS1‑like element IS1B family transposase/hypothetical protein |
? | NZ_CP009273 | 1903038 = | 1 (0.080) | intergenic (‑15/‑144) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein | |||||
* | ? | NZ_CP009273 | 360104 = | NA (NA) | 30 (2.250) | 18/168 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | = 1046001 | NA (NA) | 15 (1.130) | 13/168 | 0.2 | 83.3% | intergenic (+15/+418) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH |
? | NZ_CP009273 | = 1903046 | 3 (0.230) | intergenic (‑23/‑136) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein | |||||
* | ? | NZ_CP009273 | 1203246 = | 8 (0.600) | 3 (0.280) | 3/136 | 1.0 | 30.8% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | 1205075 = | 7 (0.650) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | = 1203261 | 8 (0.600) | 4 (0.370) | 3/136 | 1.0 | 37.2% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | = 1205058 | 7 (0.650) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | = 1391494 | NA (NA) | 5 (0.380) | 4/166 | 1.0 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
* | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 17 (1.280) | 10/168 | 0.3 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |