mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 21 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,032,398 | 0 | A | C | 72.2% | 1.0 / 11.1 | 18 | G235G (GGT→GGG) | xerD | site‑specific tyrosine recombinase XerD |
| * | NZ_CP009273 | 518,782 | 0 | T | G | 58.8% | 8.7 / 17.9 | 17 | G22G (GGT→GGG) | rhsD | rhs element protein RhsD |
| * | NZ_CP009273 | 210,043 | 0 | T | G | 58.3% | 7.1 / 10.4 | 12 | V409G (GTA→GGA) | tilS | tRNA lysidine(34) synthetase TilS |
| * | NZ_CP009273 | 976,689 | 0 | A | G | 58.3% | 1.8 / 11.7 | 12 | I63V (ATC→GTC) | ldtD | L,D‑transpeptidase |
| * | NZ_CP009273 | 2,678,659 | 0 | A | C | 57.1% | 12.5 / 15.8 | 14 | Y70D (TAT→GAT) | glyA | serine hydroxymethyltransferase |
| * | NZ_CP009273 | 842,900 | 0 | G | T | 55.6% | 7.7 / 12.1 | 9 | I187I (ATC→ATA) | glnH | glutamine ABC transporter substrate‑binding protein GlnH |
| * | NZ_CP009273 | 1,340,910 | 0 | C | A | 55.6% | 2.8 / 11.6 | 9 | L30F (TTG→TTT) | pdeR | cyclic di‑GMP phosphodiesterase |
| * | NZ_CP009273 | 4,326,728 | 0 | T | C | 55.6% | 4.7 / 13.8 | 18 | I41V (ATT→GTT) | adiC | arginine/agmatine antiporter |
| * | NZ_CP009273 | 3,837,579 | 0 | T | G | 55.0% | 9.9 / 16.5 | 20 | F86V (TTT→GTT) | adeD | adenine deaminase |
| * | NZ_CP009273 | 339,165 | 0 | A | G | 54.5% | 6.0 / 11.3 | 11 | I191V (ATT→GTT) | yahK | NADPH‑dependent aldehyde reductase YahK |
| * | NZ_CP009273 | 1,152,745 | 0 | A | G | 54.5% | 5.6 / 11.0 | 11 | G171G (GGA→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 2,141,241 | 0 | C | A | 54.5% | 2.1 / 11.7 | 11 | N29K (AAC→AAA) | yegD | molecular chaperone |
| * | NZ_CP009273 | 2,852,463 | 0 | T | G | 53.8% | 2.7 / 10.4 | 13 | M671R (ATG→AGG) | mutS | DNA mismatch repair protein MutS |
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 53.8% | 3.9 / 13.6 | 13 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 3,781,385 | 0 | T | G | 53.8% | 10.1 / 13.1 | 13 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NZ_CP009273 | 4,267,015 | 0 | A | G | 53.8% | 8.3 / 13.5 | 13 | T99T (ACT→ACC) | soxS | superoxide response transcriptional regulator SoxS |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 53.3% | 10.9 / 15.1 | 15 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 754,034 | 0 | G | T | 52.9% | 9.7 / 25.0 | 17 | intergenic (+173/‑128) | sdhB/sucA | succinate dehydrogenase iron‑sulfur subunit SdhB/2‑oxoglutarate dehydrogenase E1 component |
| * | NZ_CP009273 | 4,292,471 | 0 | A | G | 52.9% | 14.3 / 21.9 | 17 | F142S (TTC→TCC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 40.7% | 25.0 / 11.3 | 27 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |