mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,736 | A→T | intergenic (+105/‑87) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 108,362 | A→G | F242S (TTC→TCC) | zapD ← | cell division protein ZapD |
| RA | 115,488 | T→C | F90S (TTC→TCC) | ampD → | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase AmpD |
| RA | 115,628 | A→C | T137P (ACG→CCG) | ampD → | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase AmpD |
| RA | 139,618 | A→G | E118G (GAA→GGA) | yadG → | ABC transporter ATP‑binding protein |
| RA | 209,716 | T→C | I300T (ATC→ACC) | tilS → | tRNA lysidine(34) synthetase TilS |
| RA | 221,335 | T→C | noncoding (1078/1542 nt) | BW25113_RS01010 → | 16S ribosomal RNA |
| RA | 232,840 | T→A | V96E (GTG→GAG) | dnaQ → | DNA polymerase III subunit epsilon |
| RA | 264,689 | (A)5→4 | intergenic (‑18/+311) | ykfA ← / ← perR | GTPase family protein/LysR substrate‑binding domain‑containing protein |
| RA | 297,509 | G→C | G30G (GGC→GGG) | paoB ← | aldehyde oxidoreductase FAD‑binding subunit PaoB |
| RA | 314,035 | A→G | intergenic (‑5/+7) | rclC ← / ← rclB | reactive chlorine species resistance protein RclC/reactive chlorine resistance periplasmic protein RclB |
| RA | 340,444 | (A)5→4 | coding (558/816 nt) | BW25113_RS01680 → | hypothetical protein |
| RA | 354,025 | T→C | E126G (GAA→GGA) | cynR ← | transcriptional regulator CynR |
| RA | 386,045 | T→C | pseudogene (339/1527 nt) | BW25113_RS01915 → | outer membrane autotransporter barrel domain‑containing protein |
| RA | 465,464 | T→C | S380P (TCG→CCG) | mdlA → | SmdA family multidrug ABC transporter permease/ATP‑binding protein |
| RA | 508,601 | (C)6→7 | coding (570/1293 nt) | ybaT → | APC family permease |
| RA | 510,152 | Δ1 bp | coding (164/459 nt) | ybbJ ← | NfeD family protein |
| RA | 539,975 | A→G | D258D (GAT→GAC) | allC ← | allantoate deiminase |
| RA | 551,422 | C→G | G452G (GGC→GGG) | cysS → | cysteine‑‑tRNA ligase |
| RA | 554,427 | A→G | intergenic (+217/‑3) | fimA → / → fimC | type 1 fimbrial major subunit FimA/type 1 fimbria chaperone FimC |
| RA | 579,943 | (T)8→7 | intergenic (+57/+193) | appY → / ← ompT | DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT |
| RA | 601,986 | A→G | F285S (TTC→TCC) | ybdK ← | YbdK family carboxylate‑amine ligase |
| RA | 661,892 | A→C | G594G (GGT→GGG) | mrdA ← | peptidoglycan DD‑transpeptidase MrdA |
| RA | 674,442 | T→G | T141P (ACT→CCT) | ybeT ← | tetratricopeptide repeat protein |
| RA | 769,756 | A→C | E35D (GAA→GAC) | cydX → | cytochrome bd‑I oxidase subunit CydX |
| RA | 802,549 | T→G | T63T (ACA→ACC) | ybhC ← | putative acyl‑CoA thioester hydrolase |
| RA | 860,269 | A→G | V106A (GTC→GCC) | moeB ← | molybdopterin‑synthase adenylyltransferase MoeB |
| RA | 950,036 | (T)5→4 | intergenic (‑114/+292) | focA ← / ← ycaO | formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO |
| RA | 951,809 | T→G | T94P (ACC→CCC) | ycaO ← | 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO |
| RA | 1,054,234 | A→G | E232G (GAA→GGA) | torC → | pentaheme c‑type cytochrome TorC |
| RA | 1,060,988 | (A)6→5 | intergenic (+240/‑53) | yccE → / → agp | YccE family protein/bifunctional glucose‑1‑phosphatase/inositol phosphatase |
| RA | 1,065,426 | T→G | T129P (ACC→CCC) | rutF ← | pyrimidine utilization flavin reductase protein F |
| RA | 1,076,727 | (T)5→4 | intergenic (+458/‑85) | putP → / → BW25113_RS05295 | sodium/proline symporter PutP/FTR1 family protein |
| RA | 1,110,952 | T→C | intergenic (‑6/+166) | mdtG ← / ← lpxL | multidrug efflux MFS transporter MdtG/kdo(2)‑lipid IV(A) lauroyltransferase |
| RA | 1,122,270 | (A)6→5 | coding (9/924 nt) | yceM → | Gfo/Idh/MocA family oxidoreductase |
| RA | 1,194,248 | A→G | D33G (GAC→GGC) | lit → | cell death peptidase Lit |
| RA | 1,259,173 | A→G | T2A (ACC→GCC) | hemA → | glutamyl‑tRNA reductase |
| RA | 1,268,851 | T→C | T69A (ACC→GCC) | ychN ← | DsrE/F sulfur relay family protein YchN |
| RA | 1,276,251 | Δ1 bp | coding (932/3744 nt) | narG → | nitrate reductase subunit alpha |
| RA | 1,300,524 | Δ1 bp | coding (504/1005 nt) | oppF → | murein tripeptide/oligopeptide ABC transporter ATP‑binding protein OppF |
| RA | 1,321,615 | T→C | F169F (TTT→TTC) | rluB → | 23S rRNA pseudouridine(2605) synthase RluB |
| RA | 1,331,016 | A→G | Y310C (TAT→TGT) | acnA → | aconitate hydratase AcnA |
| RA | 1,392,826 | T→C | Q18Q (CAA→CAG) | uspE ← | universal stress protein UspE |
| RA | 1,394,163 | G→A | L111L (CTG→TTG) | ogt ← | methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase |
| RA | 1,402,000 | A→G | I18T (ATC→ACC) | dgcM ← | diguanylate cyclase DgcM |
| RA | 1,417,788 | (C)6→7 | coding (69/120 nt) | BW25113_RS26130 ← | hypothetical protein |
| RA | 1,423,602 | T→C | R99R (CGT→CGC) | stfR → | prophage tail fiber N‑terminal domain‑containing protein |
| RA | 1,434,377 | A→G | F222S (TTC→TCC) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,454,774 | A→G | D16G (GAT→GGT) | paaI → | hydroxyphenylacetyl‑CoA thioesterase PaaI |
| RA | 1,499,566 | A→G | S258P (TCC→CCC) | ydcO ← | BenE family transporter YdcO |
| RA | 1,503,965 | T→C | D67D (GAT→GAC) | hicB → | type II toxin‑antitoxin system antitoxin HicB |
| RA | 1,505,430 | A→G | K391E (AAA→GAA) | ydcR → | PLP‑dependent aminotransferase family protein |
| RA | 1,531,275 | G→A | L98L (CTG→TTG) | narW ← | nitrate reductase molybdenum cofactor assembly chaperone |
| RA | 1,547,935 | A→G | V54A (GTA→GCA) | adhP ← | alcohol dehydrogenase AdhP |
| RA | 1,558,439 | A→G | Y518H (TAT→CAT) | dosP ← | oxygen‑sensing cyclic‑di‑GMP phosphodiesterase |
| RA | 1,568,198 | A→G | F417S (TTC→TCC) | pqqL ← | insulinase family protein |
| RA | 1,573,157 | A→T | I148N (ATC→AAC) | yddA ← | ABC transporter ATP‑binding protein/permease |
| RA | 1,575,825 | A→T | D319E (GAT→GAA) | ydeN ← | sulfatase |
| RA | 1,576,388 | A→G | S132P (TCC→CCC) | ydeN ← | sulfatase |
| RA | 1,579,109 | A→C | G545G (GGT→GGG) | ydeP ← | acid resistance putative oxidoreductase YdeP |
| RA | 1,613,753 | (A)6→5 | coding (377/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| RA | 1,632,437 | (T)7→6 | intergenic (‑71/+8) | BW25113_RS08135 ← / ← BW25113_RS25620 | hypothetical protein/hypothetical protein |
| RA | 1,634,151 | Δ1 bp | coding (164/534 nt) | rrrQ ← | lysozyme |
| RA | 1,659,576 | T→C | F14S (TTC→TCC) | clcB → | voltage‑gated ClC‑type chloride channel ClcB |
| RA | 1,662,649 | T→G | H58P (CAC→CCC) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,671,899 | T→G | T88P (ACG→CCG) | pntA ← | Re/Si‑specific NAD(P)(+) transhydrogenase subunit alpha |
| RA | 1,673,542 | A→G | K287E (AAG→GAG) | ydgH → | DUF1471 family protein YdgH |
| RA | 1,717,498 | G→C | G374A (GGC→GCC) | ydhK → | FUSC family protein |
| RA | 1,782,276 | T→G | V192G (GTG→GGG) | ppsR → | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR |
| RA | 1,803,201 | A→G | V97A (GTC→GCC) | yniB ← | YniB family protein |
| RA | 1,807,028 | T→C | E121G (GAA→GGA) | BW25113_RS09050 ← | hypothetical protein |
| RA | 1,812,807 | (C)7→8 | intergenic (‑50/+55) | celF ← / ← chbR | 6‑phospho‑beta‑glucosidase/transcriptional regulator ChbR |
| RA | 1,838,813 | T→C | I106V (ATT→GTT) | ynjI ← | DUF1266 domain‑containing protein |
| RA | 1,854,126 | T→C | M121V (ATG→GTG) | ydjK ← | MFS transporter |
| RA | 1,903,061 | A→T | intergenic (‑38/‑121) | mgrB ← / → yobH | PhoP/PhoQ regulator MgrB/YobH family protein |
| RA | 1,965,782 | T→G | E389D (GAA→GAC) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | 1,980,420 | A→G | G5G (GGA→GGG) | ftnB → | non‑heme ferritin‑like protein |
| RA | 2,003,480 | T→C | F60S (TTC→TCC) | yedK → | SOS response‑associated peptidase |
| RA | 2,038,183 | (T)5→4 | intergenic (+78/‑236) | BW25113_RS10330 → / → yeeJ | tRNA‑Asn/inverse autotransporter adhesin YeeJ |
| RA | 2,057,664 | T→C | G95G (GGA→GGG) | cobT ← | nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
| RA | 2,064,259 | T→G | V93G (GTG→GGG) | BW25113_RS10440 → | GTPase family protein |
| RA | 2,107,964 | T→C | intergenic (‑156/+19) | galF ← / ← wcaM | UTP‑‑glucose‑1‑phosphate uridylyltransferase GalF/colanic acid biosynthesis protein WcaM |
| RA | 2,131,004 | A→G | intergenic (‑280/‑379) | wza ← / → yegH | polysaccharide export protein Wza/TerC family protein |
| RA | 2,176,805 | T→G | D109A (GAC→GCC) | yegX ← | glycoside hydrolase family 25 protein |
| RA | 2,220,044 | A→G | S236P (TCG→CCG) | yohF ← | SDR family oxidoreductase |
| RA | 2,229,956 | A→G | K405E (AAA→GAA) | preA → | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA |
| RA | 2,283,874 | Δ1 bp | intergenic (‑350/‑105) | BW25113_RS11435 ← / → narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| RA | 2,284,519 | T→C | S181P (TCC→CCC) | narP → | nitrate/nitrite response regulator protein NarP |
| RA | 2,345,414 | T→G | H147P (CAC→CCC) | glpT ← | glycerol‑3‑phosphate transporter |
| RA | 2,396,099 | G→C | A413G (GCC→GGC) | nuoC ← | NADH‑quinone oxidoreductase subunit C/D |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 2,410,868 | A→T | G103G (GGA→GGT) | yfcC → | putative basic amino acid antiporter YfcC |
| RA | 2,416,814 | T→C | K69E (AAA→GAA) | rpnB ← | recombination‑promoting nuclease RpnB |
| RA | 2,425,778 | T→C | E215G (GAA→GGA) | folC ← | bifunctional tetrahydrofolate synthase/dihydrofolate synthase |
| RA | 2,439,101 | T→C | K255E (AAG→GAG) | mepA ← | penicillin‑insensitive murein endopeptidase |
| RA | 2,463,070 | T→C | F154S (TTC→TCC) | BW25113_RS12270 → | hypothetical protein |
| RA | 2,505,777 | T→C | I137V (ATC→GTC) | mntH ← | Nramp family divalent metal transporter |
| RA | 2,526,050 | A→G | T95A (ACC→GCC) | cysK → | cysteine synthase A |
| RA | 2,536,106 | T→C | E261G (GAA→GGA) | cysP ← | thiosulfate/sulfate ABC transporter substrate‑binding protein CysP |
| RA | 2,554,121 | A→C | N169T (AAC→ACC) | BW25113_RS12740 → | hypothetical protein |
| RA | 2,661,508 | T→G | T250P (ACC→CCC) | hcaR ← | DNA‑binding transcriptional regulator HcaR |
| RA | 2,678,723 | A→C | G48G (GGT→GGG) | glyA ← | serine hydroxymethyltransferase |
| RA | 2,726,562 | (T)5→4 | coding (971/2574 nt) | clpB ← | ATP‑dependent chaperone ClpB |
| RA | 2,739,096 | T→C | E61G (GAA→GGA) | rimM ← | ribosome maturation factor RimM |
| RA | 2,741,778 | A→T | Y153F (TAC→TTC) | ypjD → | inner membrane protein YpjD |
| RA | 2,751,237 | A→G | V241V (GTT→GTC) | BW25113_RS13685 ← | hypothetical protein |
| RA | 2,778,934 | (T)6→5 | intergenic (‑564/+187) | BW25113_RS25705 ← / ← BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
| RA | 2,801,112 | A→C | T208P (ACC→CCC) | proX → | glycine betaine/L‑proline ABC transporter substrate‑binding protein ProX |
| RA | 2,818,451 | T→C | E162G (GAA→GGA) | mltB ← | lytic murein transglycosylase B |
| RA | 2,859,998 | T→C | I305V (ATT→GTT) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,882,413 | A→C | V349G (GTT→GGT) | cysI ← | assimilatory sulfite reductase (NADPH) hemoprotein subunit |
| RA | 2,888,711 | A→G | V143A (GTC→GCC) | ygcQ ← | electron transfer flavoprotein subunit alpha/FixB family protein |
| RA | 2,982,555 | T→C | F232S (TTC→TCC) | yqeI → | transcriptional regulator |
| RA | 2,987,546 | T→C | I83I (ATT→ATC) | BW25113_RS14845 → | lytic transglycosylase domain‑containing protein |
| RA | 3,011,010 | A→G | E531G (GAA→GGA) | ygfK → | putative selenate reductase subunit YgfK |
| RA | 3,098,336 | Δ1 bp | coding (545/1080 nt) | mltC → | membrane‑bound lytic murein transglycosylase MltC |
| RA | 3,103,871 | (A)7→6 | intergenic (+71/+78) | BW25113_RS15410 → / ← yghD | tRNA‑Phe/GspM family type II secretion system protein YghD |
| RA | 3,273,721 | A→G | E49G (GAA→GGA) | agaV → | PTS N‑acetylgalactosamine transporter subunit IIB |
| RA | 3,291,696 | T→G | L170F (TTA→TTC) | yraR ← | NAD(P)H‑binding protein |
| RA | 3,458,386 | A→G | E369G (GAA→GGA) | gspL → | type II secretion system protein GspL |
| RA | 3,535,339 | T→C | F525S (TTC→TCC) | feoB → | Fe(2+) transporter permease subunit FeoB |
| RA | 3,536,347 | A→G | intergenic (+24/‑179) | feoC → / → rpnA | [Fe‑S]‑dependent transcriptional repressor FeoC/recombination‑promoting nuclease RpnA |
| RA | 3,576,634 | A→G | R79R (CGA→CGG) | BW25113_RS17825 → | YrhA family protein |
| RA | 3,579,168 | T→C | E339G (GAA→GGA) | ggt ← | gamma‑glutamyltransferase |
| RA | 3,642,054 | A→G | E56G (GAA→GGA) | arsR → | As(III)‑sensing metalloregulatory transcriptional repressor ArsR |
| RA | 3,646,989 | (A)5→4 | intergenic (+23/‑332) | BW25113_RS18165 → / → slp | hypothetical protein/outer membrane lipoprotein Slp |
| RA | 3,717,969 | T→C | E237G (GAA→GGA) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,786,467 | T→C | I193V (ATT→GTT) | yibB ← | protein YibB |
| RA | 3,786,991 | T→C | D18G (GAT→GGT) | yibB ← | protein YibB |
| RA | 3,791,182 | A→C | Y292S (TAC→TCC) | waaL → | O‑antigen ligase |
| RA | 3,798,416 | (T)8→7 | coding (61/936 nt) | rfaS ← | LPS core biosynthesis protein RfaS |
| RA | 3,896,621 | A→G | D147D (GAT→GAC) | bglB ← | 6‑phospho‑beta‑glucosidase BglB |
| RA | 3,898,828 | (T)5→4 | coding (130/1878 nt) | bglF ← | PTS beta‑glucoside transporter subunit IIABC |
| RA | 4,073,163 | A→T | D26V (GAT→GTT) | BW25113_RS20185 → | hypothetical protein |
| RA | 4,117,071 | T→C | F44S (TTC→TCC) | rpmE → | 50S ribosomal protein L31 |
| RA | 4,153,816 | T→C | S84P (TCA→CCA) | btuB → | TonB‑dependent vitamin B12 receptor BtuB |
| RA | 4,180,586 | (A)7→6 | intergenic (+333/+77) | yjaZ → / ← thiH | heat‑shock protein C/2‑iminoacetate synthase ThiH |
| RA | 4,215,724 | T→G | W657G (TGG→GGG) | metH → | methionine synthase |
| RA | 4,306,692 | A→T | I115N (ATC→AAC) | phnM ← | alpha‑D‑ribose 1‑methylphosphonate 5‑triphosphate diphosphatase |
| RA | 4,330,415 | A→G | intergenic (‑77/+122) | adiA ← / ← melR | arginine decarboxylase/transcriptional regulator MelR |
| RA | 4,367,563 | T→C | intergenic (‑24/+65) | blc ← / ← ampC | lipocalin Blc/BlaEC family class C beta‑lactamase |
| RA | 4,494,539 | T→C | F222S (TTC→TCC) | nanX → | MFS transporter |
| RA | 4,525,805 | A→G | pseudogene (1198/1241 nt) | yjhR → | helicase YjhR |
| RA | 4,543,103 | A→G | E129G (GAA→GGA) | uxuB → | fructuronate reductase |
| RA | 4,593,447 | T→C | S52P (TCC→CCC) | yjjQ → | response regulator transcription factor |
| RA | 4,613,222 | C→G | R238P (CGC→CCC) | lplA ← | lipoate‑‑protein ligase LplA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 123103 | 123142 | 40 | 3 [1] | [1] 2 | aceF | pyruvate dehydrogenase complex dihydrolipoyllysine‑residue acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 295219 | 295234 | 16 | 2 [1] | [1] 5 | paoC | aldehyde oxidoreductase molybdenum‑binding subunit PaoC |
| * | * | ÷ | NZ_CP009273 | 356981 | 357589 | 609 | 2 [0] | [1] 2 | [lacA] | [lacA] |
| * | * | ÷ | NZ_CP009273 | 428511 | 428572 | 62 | 2 [1] | [1] 2 | nrdR | transcriptional regulator NrdR |
| * | * | ÷ | NZ_CP009273 | 510060 | 510108 | 49 | 2 [1] | [1] 2 | ybbJ | NfeD family protein |
| * | * | ÷ | NZ_CP009273 | 757283 | 757292 | 10 | 2 [1] | [0] 2 | odhB | 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase |
| * | * | ÷ | NZ_CP009273 | 840317 | 840324 | 8 | 3 [1] | [1] 2 | ybiO | mechanosensitive channel protein |
| * | * | ÷ | NZ_CP009273 | 902978 | 903075 | 98 | 2 [1] | [1] 2 | ybjT | SDR family oxidoreductase |
| * | * | ÷ | NZ_CP009273 | 1018363 | 1018437 | 75 | 3 [1] | [1] 2 | yccS | YccS family putative transporter |
| * | * | ÷ | NZ_CP009273 | 1168405 | 1168439 | 35 | 3 [1] | [1] 3 | mfd | transcription‑repair coupling factor |
| * | * | ÷ | NZ_CP009273 | 1183092 | 1183131 | 40 | 2 [1] | [0] 2 | roxA | [50S ribosomal protein L16]‑arginine 3‑hydroxylase |
| * | * | ÷ | NZ_CP009273 | 1228611 | 1228637 | 27 | 2 [1] | [1] 3 | [nhaB] | [nhaB] |
| * | * | ÷ | NZ_CP009273 | 1240344 | 1240366 | 23 | 4 [1] | [1] 4 | ymgE | GlsB/YeaQ/YmgE family stress response membrane protein |
| * | * | ÷ | NZ_CP009273 | 1240707 | 1240743 | 37 | 2 [1] | [0] 2 | BW25113_RS06225 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 1241375 | 1241410 | 36 | 2 [1] | [0] 2 | treA | alpha,alpha‑trehalase |
| * | * | ÷ | NZ_CP009273 | 1242991 | 1243005 | 15 | 5 [1] | [0] 2 | treA/dhaM | alpha,alpha‑trehalase/dihydroxyacetone kinase phosphoryl donor subunit DhaM |
| * | * | ÷ | NZ_CP009273 | 1252467 | 1252511 | 45 | 5 [0] | [1] 2 | ychF | redox‑regulated ATPase YchF |
| * | * | ÷ | NZ_CP009273 | 1314980 | 1314993 | 14 | 2 [0] | [1] 2 | trpD | bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD |
| * | * | ÷ | NZ_CP009273 | 1317340 | 1317398 | 59 | 2 [1] | [0] 2 | trpL/yciV | trp operon leader peptide/RNase AM |
| * | * | ÷ | NZ_CP009273 | 1320582 | 1320591 | 10 | 2 [1] | [1] 3 | yciQ | DUF2207 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1357697 | 1357779 | 83 | 2 [1] | [1] 2 | puuC | aldehyde dehydrogenase PuuC |
| * | * | ÷ | NZ_CP009273 | 1360134 | 1360207 | 74 | 2 [1] | [1] 3 | puuE | 4‑aminobutyrate transaminase |
| * | * | ÷ | NZ_CP009273 | 1410093 | 1410125 | 33 | 2 [1] | [1] 2 | recE | exodeoxyribonuclease VIII |
| * | * | ÷ | NZ_CP009273 | 1419592 | 1419605 | 14 | 2 [1] | [1] 2 | trkG/ynaK | Trk system potassium transporter TrkG/ParB/Srx family N‑terminal domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1433248 | 1433254 | 7 | 2 [1] | [1] 2 | nifJ | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| * | * | ÷ | NZ_CP009273 | 1438434 | 1438461 | 28 | 2 [1] | [1] 2 | ydbH | YdbH family protein |
| * | * | ÷ | NZ_CP009273 | 1521152 | 1521161 | 10 | 2 [1] | [0] 2 | yncG/yncH | glutathione S‑transferase family protein/YncH family protein |
| * | * | ÷ | NZ_CP009273 | 1524588 | 1524627 | 40 | 2 [0] | [1] 3 | BW25113_RS26145 BW25113_RS25600 |
hypothetical protein protein YncO |
| * | * | ÷ | NZ_CP009273 | 1530637 | 1530649 | 13 | 2 [1] | [1] 2 | narI | respiratory nitrate reductase subunit gamma |
| * | * | ÷ | NZ_CP009273 | 1532606 | 1532670 | 65 | 2 [1] | [1] 2 | narH | nitrate reductase subunit beta |
| * | * | ÷ | NZ_CP009273 | 1533903 | 1533938 | 36 | 2 [1] | [1] 2 | narZ | nitrate reductase Z subunit alpha |
| * | * | ÷ | NZ_CP009273 | 1543023 | 1543095 | 73 | 5 [1] | [0] 2 | fdnG | formate dehydrogenase‑N subunit alpha |
| * | * | ÷ | NZ_CP009273 | 1591529 | 1591542 | 14 | 2 [1] | [1] 2 | BW25113_RS07915 | ECSE_1600 family autotransporter |
| * | * | ÷ | NZ_CP009273 | 1605753 | 1605794 | 42 | 2 [1] | [1] 2 | dgcF | GGDEF domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1606353 | 1606375 | 23 | 2 [1] | [0] 3 | yneG | DUF4186 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1655916 | 1655942 | 27 | 2 [1] | [1] 2 | ynfF | dimethyl sulfoxide reductase subunit A |
| * | * | ÷ | NZ_CP009273 | 1663725 | 1663758 | 34 | 2 [1] | [1] 2 | ynfL | LysR family transcriptional regulator |
| * | * | ÷ | NZ_CP009273 | 1671117 | 1671123 | 7 | 2 [0] | [1] 2 | pntA | Re/Si‑specific NAD(P)(+) transhydrogenase subunit alpha |
| * | * | ÷ | NZ_CP009273 | 1749522 | 1749534 | 13 | 3 [1] | [1] 3 | fumD/BW25113_RS26160 | fumarate hydratase FumD/protein YnhH |
| * | * | ÷ | NZ_CP009273 | 1778273 | 1778291 | 19 | 2 [1] | [1] 3 | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
| * | * | ÷ | NZ_CP009273 | 1790552 | 1790568 | 17 | 4 [1] | [0] 2 | pheT | phenylalanine‑‑tRNA ligase subunit beta |
| * | * | ÷ | NZ_CP009273 | 1790913 | 1790937 | 25 | 2 [1] | [1] 2 | pheT | phenylalanine‑‑tRNA ligase subunit beta |
| * | * | ÷ | NZ_CP009273 | 1794646 | 1794658 | 13 | 2 [1] | [0] 2 | infC | translation initiation factor IF‑3 |
| * | * | ÷ | NZ_CP009273 | 1798288 | 1798321 | 34 | 2 [1] | [1] 3 | espL1 | type III secretion system effector EspL1 |
| * | * | ÷ | NZ_CP009273 | 1801076 | 1801109 | 34 | 2 [1] | [1] 2 | pfkB | 6‑phosphofructokinase II |
| * | * | ÷ | NZ_CP009273 | 1820865 | 1820933 | 69 | 2 [1] | [1] 2 | astE | succinylglutamate desuccinylase |
| * | * | ÷ | NZ_CP009273 | 1824482 | 1824512 | 31 | 2 [1] | [1] 3 | astA | arginine N‑succinyltransferase |
| * | * | ÷ | NZ_CP009273 | 1851934 | 1851961 | 28 | 2 [1] | [1] 2 | ydjI | ketose‑bisphosphate aldolase |
| * | * | ÷ | NZ_CP009273 | 1871561 | 1871631 | 71 | 3 [1] | [1] 3 | yoaF | DUF333 domain‑containing lipoprotein YoaF |
| * | * | ÷ | NZ_CP009273 | 1893755 | 1893812 | 58 | 3 [1] | [1] 2 | pdeD | cyclic diguanylate phosphodiesterase |
| * | * | ÷ | NZ_CP009273 | 1895721 | 1895775 | 55 | 2 [1] | [1] 2 | yoaE | CNNM family cation transport protein YoaE |
| * | * | ÷ | NZ_CP009273 | 1900104 | 1900199 | 96 | 2 [1] | [1] 2 | mntP | manganese efflux pump MntP |
| * | * | ÷ | NZ_CP009273 | 1925940 | 1925973 | 34 | 2 [1] | [1] 2 | purT | formate‑dependent phosphoribosylglycinamide formyltransferase |
| * | * | ÷ | NZ_CP009273 | 1936342 | 1936386 | 45 | 2 [1] | [1] 3 | znuA | zinc ABC transporter substrate‑binding protein ZnuA |
| * | * | ÷ | NZ_CP009273 | 1945211 | 1945239 | 29 | 2 [0] | [1] 2 | yecD | hydrolase |
| * | * | ÷ | NZ_CP009273 | 1965359 | 1965402 | 44 | 2 [1] | [1] 2 | tar | methyl‑accepting chemotaxis protein II |
| * | * | ÷ | NZ_CP009273 | 1970450 | 1970450 | 1 | 2 [0] | [0] 2 | motB | flagellar motor protein MotB |
| * | * | ÷ | NZ_CP009273 | 2001095 | 2001162 | 68 | 2 [1] | [1] 2 | [amyA]–[yedD] | [amyA],[yedD] |
| * | * | ÷ | NZ_CP009273 | 2012146 | 2012224 | 79 | 2 [1] | [1] 2 | fliK | flagellar hook‑length control protein FliK |
| * | * | ÷ | NZ_CP009273 | 2016831 | 2016837 | 7 | 2 [0] | [1] 2 | fliR | flagellar biosynthetic protein FliR |
| * | * | ÷ | NZ_CP009273 | 2029886 | 2029914 | 29 | 2 [1] | [0] 2 | hchA | protein deglycase HchA |
| * | * | ÷ | NZ_CP009273 | 2033199 | 2033252 | 54 | 2 [1] | [0] 2 | msrP | protein‑methionine‑sulfoxide reductase catalytic subunit MsrP |
| * | * | ÷ | NZ_CP009273 | 2069491 | 2069493 | 3 | 2 [0] | [0] 3 | BW25113_RS10450 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 2137679 | 2137694 | 16 | 2 [0] | [1] 2 | dgcE | diguanylate cyclase |
| * | * | ÷ | NZ_CP009273 | 2243811 | 2243827 | 17 | 3 [0] | [1] 2 | yeiH | YeiH family protein |
| * | * | ÷ | NZ_CP009273 | 2303246 | 2303266 | 21 | 2 [0] | [1] 2 | ada | bifunctional DNA‑binding transcriptional regulator/O6‑methylguanine‑DNA methyltransferase Ada |
| * | * | ÷ | NZ_CP009273 | 2452508 | 2452510 | 3 | 2 [0] | [0] 3 | fadJ | fatty acid oxidation complex subunit alpha FadJ |
| * | * | ÷ | NZ_CP009273 | 2483935 | 2483968 | 34 | 4 [0] | [1] 3 | oxc | oxalyl‑CoA decarboxylase |
| * | * | ÷ | NZ_CP009273 | 2499571 | 2499599 | 29 | 2 [1] | [1] 2 | ypdF | aminopeptidase |
| * | * | ÷ | NZ_CP009273 | 2564238 | 2564246 | 9 | 2 [1] | [1] 2 | eutE | aldehyde dehydrogenase EutE |
| * | * | ÷ | NZ_CP009273 | 2672212 | 2672259 | 48 | 2 [1] | [1] 2 | yphF | substrate‑binding domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 2687954 | 2687981 | 28 | 2 [0] | [1] 2 | purL | phosphoribosylformylglycinamidine synthase |
| * | * | ÷ | NZ_CP009273 | 2834010 | 2834044 | 35 | 2 [1] | [0] 2 | ascF | PTS cellobiose/arbutin/salicin transporter subunit IIBC |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 322269 | 12 (0.840) | 3 (0.240) | 3/150 | 1.1 | 21.0% | coding (690/1671 nt) | betA | choline dehydrogenase |
| ? | NZ_CP009273 | = 322352 | 12 (0.960) | coding (607/1671 nt) | betA | choline dehydrogenase | |||||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 12 (0.840) | 10/170 | 0.3 | 42.9% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 16 (1.120) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 377145 | NA (NA) | 3 (0.240) | 3/152 | 1.1 | NA | coding (24/914 nt) | BW25113_RS01870 | IS3‑like element IS2 family transposase |
| ? | NZ_CP009273 | = 377199 | NA (NA) | coding (78/914 nt) | BW25113_RS01870 | IS3‑like element IS2 family transposase | |||||
| * | ? | NZ_CP009273 | 754093 = | 14 (0.980) | 3 (0.230) | 3/154 | 1.1 | 21.7% | intergenic (+232/‑69) | sdhB/sucA | succinate dehydrogenase iron‑sulfur subunit SdhB/2‑oxoglutarate dehydrogenase E1 component |
| ? | NZ_CP009273 | 754113 = | 9 (0.700) | intergenic (+252/‑49) | sdhB/sucA | succinate dehydrogenase iron‑sulfur subunit SdhB/2‑oxoglutarate dehydrogenase E1 component | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 15 (1.070) | 12/168 | 0.2 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 1 (0.070) | 17 (1.190) | 16/170 | 0.1 | 94.4% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | = 4532507 | 11 (0.770) | 6 (0.470) | 5/152 | 0.7 | 44.7% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 5 (0.390) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||