mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 161 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,380,357 | 0 | A | T | 70.6% | ‑3.4 / 12.6 | 17 | intergenic (+47/‑56) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 66.7% | 1.5 / 14.2 | 18 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 66.7% | ‑4.4 / 35.6 | 39 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 2,370,630 | 0 | A | C | 60.0% | 2.8 / 11.9 | 20 | Y148D (TAT→GAT) | menH | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 59.3% | 16.4 / 29.6 | 27 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,152,727 | 0 | T | G | 59.1% | 14.3 / 22.0 | 22 | G165G (GGT→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 58.6% | 5.5 / 34.0 | 29 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 3,012,931 | 0 | A | C | 56.0% | 12.9 / 30.4 | 25 | T138P (ACA→CCA) | ssnA | putative aminohydrolase SsnA |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 55.0% | 37.0 / 101.6 | 80 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 970,375 | 0 | A | G | 55.0% | 14.1 / 19.7 | 20 | I201V (ATT→GTT) | mukF | chromosome partition protein MukF |
| * | NZ_CP009273 | 700,996 | 0 | C | A | 54.5% | 20.4 / 35.3 | 22 | P533T (CCG→ACG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 2,370,755 | 0 | A | C | 54.5% | 6.6 / 12.4 | 11 | V106G (GTT→GGT) | menH | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 54.5% | 1.6 / 29.2 | 22 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 3,273,830 | 0 | A | C | 54.5% | 38.8 / 49.4 | 33 | T85T (ACA→ACC) | agaV | PTS N‑acetylgalactosamine transporter subunit IIB |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 53.7% | 18.9 / 72.0 | 54 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 822,957 | 0 | A | G | 53.3% | 26.5 / 40.1 | 30 | L494P (CTC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 2,023,591 | 0 | T | G | 52.9% | 9.2 / 12.3 | 17 | V191G (GTG→GGG) | yedA | drug/metabolite exporter YedA |
| * | NZ_CP009273 | 3,738,402 | 0 | A | C | 52.9% | 21.3 / 32.2 | 35 | D80A (GAC→GCC) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| * | NZ_CP009273 | 2,141,214 | 0 | T | G | 51.7% | 31.7 / 39.0 | 29 | G20G (GGT→GGG) | yegD | molecular chaperone |
| * | NZ_CP009273 | 3,020,300 | 0 | A | C | 51.3% | 47.5 / 57.7 | 38 | E391D (GAA→GAC) | guaD | guanine deaminase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4398991 = | 95 (1.770) | 4 (0.090) | 4/138 | 3.6 | 4.7% | intergenic (+79/‑101) | rnr/rlmB | ribonuclease R/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| ? | NZ_CP009273 | 4399052 = | 83 (1.880) | intergenic (+140/‑40) | rnr/rlmB | ribonuclease R/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
| * | ? | NZ_CP009273 | 278994 = | 85 (1.580) | 5 (0.100) | 4/152 | 3.9 | 5.3% | coding (83/1968 nt) | yagF | xylonate dehydratase YagF |
| ? | NZ_CP009273 | 279036 = | 103 (2.120) | coding (125/1968 nt) | yagF | xylonate dehydratase YagF | |||||
| * | ? | NZ_CP009273 | = 471426 | 47 (0.870) | 3 (0.070) | 3/144 | 4.2 | 7.6% | intergenic (+19/+12) | ybaY/BW25113_RS02350 | YbaY family lipoprotein/MGMT family protein |
| ? | NZ_CP009273 | = 471428 | 33 (0.720) | intergenic (+21/+10) | ybaY/BW25113_RS02350 | YbaY family lipoprotein/MGMT family protein | |||||
| * | ? | NZ_CP009273 | 3538002 = | 68 (1.260) | 3 (0.060) | 3/150 | 4.3 | 4.3% | coding (202/771 nt) | bioH | pimeloyl‑ACP methyl ester esterase BioH |
| ? | NZ_CP009273 | 3538061 = | 72 (1.500) | coding (143/771 nt) | bioH | pimeloyl‑ACP methyl ester esterase BioH | |||||
| * | ? | NZ_CP009273 | 2640634 = | 31 (0.580) | 3 (0.060) | 3/150 | 4.3 | 8.7% | coding (51/2313 nt) | pbpC | peptidoglycan glycosyltransferase PbpC |
| ? | NZ_CP009273 | 2640664 = | 35 (0.730) | coding (21/2313 nt) | pbpC | peptidoglycan glycosyltransferase PbpC | |||||
| * | ? | NZ_CP009273 | 4333102 = | 73 (1.360) | 3 (0.060) | 3/152 | 4.4 | 4.5% | intergenic (+19/‑84) | melA/melB | alpha‑galactosidase/melibiose:sodium transporter MelB |
| ? | NZ_CP009273 | 4333128 = | 62 (1.280) | intergenic (+45/‑58) | melA/melB | alpha‑galactosidase/melibiose:sodium transporter MelB | |||||
| * | ? | NZ_CP009273 | 3696656 = | 64 (1.190) | 3 (0.060) | 3/152 | 4.4 | 5.6% | coding (553/984 nt) | dppD | dipeptide ABC transporter ATP‑binding protein |
| ? | NZ_CP009273 | 3696733 = | 44 (0.910) | coding (476/984 nt) | dppD | dipeptide ABC transporter ATP‑binding protein | |||||
| * | ? | NZ_CP009273 | = 1832477 | 60 (1.120) | 3 (0.060) | 3/152 | 4.4 | 5.6% | coding (1009/1536 nt) | ynjC | ABC transporter permease subunit |
| ? | NZ_CP009273 | = 1832487 | 47 (0.970) | coding (1019/1536 nt) | ynjC | ABC transporter permease subunit | |||||