mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 170 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,380,357 | 0 | A | T | 68.4% | ‑3.7 / 16.3 | 19 | intergenic (+47/‑56) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 642,203 | 0 | T | G | 65.0% | ‑1.5 / 16.5 | 20 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 63.6% | 16.0 / 34.4 | 33 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 63.6% | ‑4.0 / 21.1 | 22 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 63.2% | 28.2 / 41.9 | 38 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 61.1% | 7.3 / 34.7 | 36 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 970,375 | 0 | A | G | 61.1% | 12.1 / 17.0 | 18 | I201V (ATT→GTT) | mukF | chromosome partition protein MukF |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 60.0% | 7.7 / 41.4 | 35 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 59.0% | 36.3 / 45.3 | 39 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 1,620,647 | 0 | T | A | 58.3% | 4.9 / 13.5 | 12 | S331C (AGC→TGC) | dcp | peptidyl‑dipeptidase Dcp |
| * | NZ_CP009273 | 1,620,650 | 0 | A | C | 58.3% | 0.8 / 12.5 | 12 | F330V (TTT→GTT) | dcp | peptidyl‑dipeptidase Dcp |
| * | NZ_CP009273 | 1,620,654 | 0 | G | C | 58.3% | 5.9 / 14.2 | 12 | G328G (GGC→GGG) | dcp | peptidyl‑dipeptidase Dcp |
| * | NZ_CP009273 | 1,819,318 | 0 | G | A | 57.1% | 1.9 / 42.3 | 35 | intergenic (‑124/+79) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
| * | NZ_CP009273 | 2,370,630 | 0 | A | C | 57.1% | 14.1 / 21.8 | 21 | Y148D (TAT→GAT) | menH | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| * | NZ_CP009273 | 1,819,313 | 0 | G | A | 55.9% | 9.8 / 41.8 | 34 | intergenic (‑119/+84) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
| * | NZ_CP009273 | 3,090,826 | 0 | T | G | 55.8% | 47.2 / 52.7 | 43 | G67G (GGT→GGG) | hemW | radical SAM family heme chaperone HemW |
| * | NZ_CP009273 | 642,216 | 0 | T | C | 55.6% | 3.9 / 21.4 | 18 | K250K (AAA→AAG) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| * | NZ_CP009273 | 1,316,729 | 0 | C | A | 55.0% | 19.1 / 29.2 | 20 | E159* (GAA→TAA) | trpE | anthranilate synthase component I |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 54.9% | 38.7 / 146.8 | 111 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 892,802 | 0 | T | G | 54.5% | 10.6 / 12.6 | 11 | V88G (GTG→GGG) | potI | putrescine ABC transporter permease PotI |