mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,213,525 | 0 | C | T | 60.0% | ‑2.7 / 14.2 | 15 | R11K (AGA→AAA) | iclR | glyoxylate bypass operon transcriptional repressor IclR |
| * | NZ_CP009273 | 1,430,446 | 0 | A | C | 57.1% | 9.0 / 16.4 | 14 | G235G (GGT→GGG) | ompN | porin OmpN |
| * | NZ_CP009273 | 3,964,452 | 0 | T | G | 57.1% | 6.7 / 13.9 | 14 | G320G (GGT→GGG) | wecB | UDP‑N‑acetylglucosamine 2‑epimerase (non‑hydrolyzing) |
| * | NZ_CP009273 | 890,381 | 0 | A | C | 54.5% | 4.1 / 11.1 | 11 | intergenic (+29/‑66) | potF/potG | spermidine/putrescine ABC transporter substrate‑binding protein PotF/putrescine ABC transporter ATP‑binding subunit PotG |
| * | NZ_CP009273 | 3,029,116 | 0 | A | C | 54.5% | 9.0 / 12.8 | 11 | G175G (GGT→GGG) | prfB | peptide chain release factor 2 |
| * | NZ_CP009273 | 3,401,166 | 0 | A | G | 54.5% | 5.8 / 10.3 | 11 | G67G (GGA→GGG) | panF | sodium/pantothenate symporter |
| * | NZ_CP009273 | 4,403,074 | 0 | T | G | 53.3% | 9.0 / 17.7 | 16 | L77R (CTG→CGG) | yjfC | glutathionylspermidine synthase family protein |
| * | NZ_CP009273 | 3,381,045 | 0 | G | A | 48.0% | 19.3 / 13.5 | 25 | S168F (TCT→TTT) | aaeB | p‑hydroxybenzoic acid efflux pump subunit AaeB |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 43.6% | 81.7 / 19.7 | 55 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 353,586 | 0 | A | T | 41.2% | 36.8 / 18.6 | 34 | N272K (AAT→AAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 328,702 | 0 | G | T | 35.3% | 68.0 / 12.2 | 34 | L207F (TTG→TTT) | pdeL | DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| * | NZ_CP009273 | 360,144 | 0 | T | C | 28.9% | 76.5 / 19.8 | 45 | intergenic (‑75/+211) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| * | NZ_CP009273 | 294,671 | 0 | A | C | 27.5% | 123.5 / 10.5 | 51 | Y659D (TAT→GAT) | paoC | aldehyde oxidoreductase molybdenum‑binding subunit PaoC |
| * | NZ_CP009273 | 341,015 | 0 | G | A | 26.7% | 137.6 / 16.1 | 60 | intergenic (+313/‑100) | BW25113_RS01680/BW25113_RS01685 | hypothetical protein/hypothetical protein |
| * | NZ_CP009273 | 341,039 | 0 | C | A | 26.6% | 182.4 / 26.8 | 65 | intergenic (+337/‑76) | BW25113_RS01680/BW25113_RS01685 | hypothetical protein/hypothetical protein |
| * | NZ_CP009273 | 360,147 | 0 | G | C | 26.2% | 101.3 / 14.9 | 42 | intergenic (‑78/+208) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| * | NZ_CP009273 | 293,763 | 0 | C | A | 25.7% | 174.4 / 11.8 | 70 | L225F (TTG→TTT) | paoD | molybdenum cofactor insertion chaperone PaoD |
| * | NZ_CP009273 | 296,422 | 0 | G | C | 22.2% | 170.3 / 13.3 | 63 | P75R (CCG→CGG) | paoC | aldehyde oxidoreductase molybdenum‑binding subunit PaoC |