mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 46 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 67.7% | 1.1 / 25.1 | 32 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 1,152,727 | 0 | T | G | 62.5% | 8.9 / 15.7 | 16 | G165G (GGT→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 62.5% | ‑4.2 / 30.6 | 32 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 886,740 | 0 | C | G | 61.9% | 15.2 / 26.0 | 21 | A34G (GCC→GGC) | nfsA | nitroreductase NfsA |
| * | NZ_CP009273 | 3,594,920 | 0 | A | C | 61.1% | 9.6 / 12.3 | 18 | V176G (GTG→GGG) | ftsX | permease‑like cell division protein FtsX |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 60.9% | 17.2 / 22.5 | 23 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 4,248,906 | 0 | G | T | 60.0% | 11.7 / 22.9 | 15 | A395S (GCG→TCG) | dinF | MATE family efflux transporter DinF |
| * | NZ_CP009273 | 6,994 | 0 | A | C | 58.3% | 13.6 / 24.9 | 24 | G322G (GGT→GGG) | yaaJ | sodium:alanine symporter family protein |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 58.1% | 21.4 / 40.6 | 31 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 497,028 | 0 | A | C | 57.1% | 10.8 / 16.7 | 14 | V556G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 497,031 | 0 | A | C | 57.1% | 8.0 / 15.5 | 14 | V555G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 4,248,902 | 0 | T | G | 57.1% | 7.9 / 13.8 | 14 | G393G (GGT→GGG) | dinF | MATE family efflux transporter DinF |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 56.7% | 18.3 / 51.1 | 30 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 2,216,154 | 0 | T | G | 56.2% | 8.0 / 14.5 | 16 | V164G (GTG→GGG) | dld | D‑lactate dehydrogenase |
| * | NZ_CP009273 | 2,134,407 | 0 | A | C | 55.0% | 17.8 / 27.9 | 20 | G229G (GGT→GGG) | asmA | outer membrane assembly protein AsmA |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 54.3% | 2.0 / 38.2 | 35 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 3,023,324 | 0 | A | C | 53.8% | 9.0 / 16.8 | 13 | L323V (TTA→GTA) | ygfT | formate‑dependent uric acid utilization protein YgfT |
| * | NZ_CP009273 | 106,295 | 0 | T | G | 53.3% | 16.7 / 20.7 | 15 | G510G (GGT→GGG) | secA | preprotein translocase subunit SecA |
| * | NZ_CP009273 | 2,007,693 | 0 | T | C | 53.3% | 9.3 / 14.0 | 16 | P328P (CCT→CCC) | fliF | flagellar basal‑body MS‑ring/collar protein FliF |
| * | NZ_CP009273 | 4,102,506 | 0 | T | G | 53.3% | 3.4 / 17.4 | 15 | G88G (GGT→GGG) | yiiR | DUF805 domain‑containing protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1203246 = | 31 (1.030) | 4 (0.160) | 3/134 | 2.0 | 19.0% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 9 (0.370) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||