mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 107 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,162,884 | 0 | T | G | 72.7% | 46.9 / 12.8 | 22 | I231R (ATA→AGA) | yegS | lipid kinase YegS |
| * | NZ_CP009273 | 711,081 | 0 | A | C | 66.7% | 6.1 / 11.2 | 15 | T72P (ACC→CCC) | BW25113_RS03560 | lipoprotein |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 65.4% | 8.8 / 17.2 | 26 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 63.6% | 7.8 / 30.5 | 34 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 3,291,076 | 0 | A | C | 63.0% | 8.2 / 28.1 | 27 | V141G (GTG→GGG) | yraQ | permease |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 61.8% | 22.1 / 38.0 | 35 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 2,505,251 | 0 | A | C | 60.0% | 1.2 / 12.0 | 15 | V312G (GTG→GGG) | mntH | Nramp family divalent metal transporter |
| * | NZ_CP009273 | 4,290,979 | 0 | T | G | 60.0% | 8.7 / 16.1 | 20 | T639T (ACA→ACC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 1,663,777 | 0 | C | G | 58.3% | 1.1 / 10.1 | 12 | A25P (GCC→CCC) | ynfL | LysR family transcriptional regulator |
| * | NZ_CP009273 | 4,127,543 | 0 | T | G | 58.3% | 3.4 / 11.1 | 12 | T15P (ACC→CCC) | yijF | DUF1287 domain‑containing protein |
| * | NZ_CP009273 | 1,673,561 | 0 | A | C | 57.6% | 20.8 / 26.7 | 33 | Y293S (TAC→TCC) | ydgH | DUF1471 family protein YdgH |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 57.1% | ‑4.5 / 29.4 | 28 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 56.4% | 17.7 / 39.2 | 39 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 1,377,967 | 0 | C | A | 56.2% | 12.7 / 26.1 | 16 | L84F (TTG→TTT) | ycjW | LacI family DNA‑binding transcriptional regulator |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 55.7% | 12.8 / 79.2 | 70 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 612,012 | 0 | T | G | 55.0% | 14.0 / 25.4 | 20 | G800G (GGT→GGG) | entF | enterobactin non‑ribosomal peptide synthetase EntF |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 54.5% | 12.5 / 38.1 | 33 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 54.2% | 17.6 / 28.3 | 24 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 53.8% | 24.8 / 26.7 | 26 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 1,663,794 | 0 | T | A | 53.8% | 2.8 / 14.2 | 13 | H19L (CAT→CTT) | ynfL | LysR family transcriptional regulator |