mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 55 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 997,447 | 0 | T | G | 62.5% | 1.3 / 16.1 | 24 | V62G (GTA→GGA) | elfG | fimbrial protein |
| * | NZ_CP009273 | 2,141,214 | 0 | T | G | 62.5% | 4.5 / 13.5 | 16 | G20G (GGT→GGG) | yegD | molecular chaperone |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 61.1% | 8.3 / 14.3 | 18 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 2,978,077 | 0 | G | C | 61.1% | 7.1 / 19.3 | 18 | P292R (CCG→CGG) | yqeF | acetyl‑CoA C‑acetyltransferase |
| * | NZ_CP009273 | 2,089,567 | 0 | T | G | 60.0% | 8.7 / 13.2 | 15 | G81G (GGT→GGG) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 4,558,321 | 0 | T | G | 59.1% | 18.0 / 22.4 | 22 | T6P (ACC→CCC) | mdtM | multidrug efflux MFS transporter MdtM |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 58.8% | 3.2 / 17.9 | 17 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,430,449 | 0 | A | C | 58.3% | 18.6 / 25.7 | 24 | G234G (GGT→GGG) | ompN | porin OmpN |
| * | NZ_CP009273 | 2,678,659 | 0 | A | C | 58.3% | 6.2 / 10.3 | 12 | Y70D (TAT→GAT) | glyA | serine hydroxymethyltransferase |
| * | NZ_CP009273 | 4,558,329 | 0 | C | A | 57.9% | 3.9 / 28.3 | 19 | R3L (CGT→CTT) | mdtM | multidrug efflux MFS transporter MdtM |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 57.1% | 9.4 / 13.2 | 14 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 56.7% | 7.5 / 32.0 | 30 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 56.5% | 16.8 / 30.6 | 24 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| * | NZ_CP009273 | 937,169 | 0 | T | G | 56.2% | 4.0 / 17.7 | 16 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 55.0% | 17.7 / 26.0 | 20 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 55.0% | 7.6 / 26.7 | 20 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 2,852,477 | 0 | G | A | 54.5% | 1.8 / 19.6 | 22 | E676K (GAA→AAA) | mutS | DNA mismatch repair protein MutS |
| * | NZ_CP009273 | 3,254,414 | 0 | A | C | 54.2% | 17.0 / 34.0 | 24 | V455G (GTG→GGG) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase |
| * | NZ_CP009273 | 624,108 | 0 | T | G | 53.8% | 7.9 / 12.7 | 14 | G34G (GGT→GGG) | entA | 2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase EntA |
| * | NZ_CP009273 | 1,074,938 | 0 | C | G | 53.8% | 12.7 / 17.8 | 13 | L60V (CTG→GTG) | putP | sodium/proline symporter PutP |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4390071 = | 33 (1.230) | 4 (0.150) | 4/172 | 1.9 | 10.5% | intergenic (+52/‑34) | miaA/hfq | tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA/RNA chaperone Hfq |
| ? | NZ_CP009273 | = 4390089 | 35 (1.300) | intergenic (+70/‑16) | miaA/hfq | tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA/RNA chaperone Hfq | |||||