mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 8,321 | A→G | 35.7% | Q28Q (CAA→CAG) | talB → | transaldolase B |
| RA | 8,324 | G→T | 35.7% | P29P (CCG→CCT) | talB → | transaldolase B |
| RA | 8,336 | A→C | 37.6% | T33T (ACA→ACC) | talB → | transaldolase B |
| RA | 8,339 | C→T | 37.8% | T34T (ACC→ACT) | talB → | transaldolase B |
| RA | 8,348 | T→C | 41.2% | S37S (TCT→TCC) | talB → | transaldolase B |
| RA | 8,351 | C→G | 41.2% | L38L (CTC→CTG) | talB → | transaldolase B |
| RA | 8,357 | T→C | 41.2% | L40L (CTT→CTC) | talB → | transaldolase B |
| RA | 8,358 | A→G | 41.2% | N41D (AAC→GAC) ‡ | talB → | transaldolase B |
| RA | 8,359 | A→G | 41.1% | N41S (AAC→AGC) ‡ | talB → | transaldolase B |
| RA | 8,363 | A→G | 41.2% | A42A (GCA→GCG) | talB → | transaldolase B |
| RA | 8,366 | G→T | 41.4% | A43A (GCG→GCT) | talB → | transaldolase B |
| RA | 8,372 | T→C | 47.6% | I45I (ATT→ATC) | talB → | transaldolase B |
| RA | 8,375 | G→T | 47.6% | P46P (CCG→CCT) | talB → | transaldolase B |
| RA | 8,378 | A→G | 50.0% | E47E (GAA→GAG) | talB → | transaldolase B |
| RA | 8,388 | T→C | 52.5% | L51L (TTG→CTG) | talB → | transaldolase B |
| RA | 8,396 | T→C | 55.6% | D53D (GAT→GAC) | talB → | transaldolase B |
| RA | 8,399 | T→C | 58.0% | D54D (GAT→GAC) | talB → | transaldolase B |
| RA | 8,414 | G→T | 50.0% | A59A (GCG→GCT) | talB → | transaldolase B |
| RA | 8,415 | A→C | 50.0% | K60Q (AAA→CAA) ‡ | talB → | transaldolase B |
| RA | 8,416 | A→G | 50.1% | K60R (AAA→AGA) ‡ | talB → | transaldolase B |
| RA | 8,417 | A→T | 50.1% | K60N (AAA→AAT) ‡ | talB → | transaldolase B |
| RA | 8,419 | A→G | 50.1% | Q61R (CAG→CGG) ‡ | talB → | transaldolase B |
| RA | 8,420 | G→C | 50.0% | Q61H (CAG→CAC) ‡ | talB → | transaldolase B |
| RA | 8,428 | A→G | 56.0% | N64S (AAC→AGC) | talB → | transaldolase B |
| RA | 8,448 | G→C | 55.6% | V71L (GTG→CTG) ‡ | talB → | transaldolase B |
| RA | 8,450 | G→C | 55.6% | V71V (GTG→GTC) ‡ | talB → | transaldolase B |
| RA | 8,453 | C→T | 57.8% | D72D (GAC→GAT) | talB → | transaldolase B |
| RA | 8,456 | G→T | 58.0% | A73A (GCG→GCT) | talB → | transaldolase B |
| RA | 8,457 | A→T | 58.7% | T74S (ACC→TCC) | talB → | transaldolase B |
| RA | 8,462 | C→T | 57.7% | D75D (GAC→GAT) | talB → | transaldolase B |
| RA | 8,465 | A→G | 60.7% | K76K (AAA→AAG) | talB → | transaldolase B |
| RA | 8,471 | A→G | 62.1% | A78A (GCA→GCG) | talB → | transaldolase B |
| RA | 8,474 | A→G | 65.6% | V79V (GTA→GTG) | talB → | transaldolase B |
| RA | 8,477 | T→C | 65.4% | N80N (AAT→AAC) | talB → | transaldolase B |
| RA | 8,480 | T→C | 65.4% | I81I (ATT→ATC) | talB → | transaldolase B |
| RA | 8,486 | G→C | 66.7% | L83L (CTG→CTC) | talB → | transaldolase B |
| RA | 8,492 | C→T | 66.7% | I85I (ATC→ATT) | talB → | transaldolase B |
| RA | 8,502 | G→A | 65.6% | V89I (GTT→ATT) ‡ | talB → | transaldolase B |
| RA | 8,504 | T→C | 65.6% | V89V (GTT→GTC) ‡ | talB → | transaldolase B |
| RA | 8,519 | A→C | 63.3% | S94S (TCA→TCC) | talB → | transaldolase B |
| RA | 8,522 | T→C | 63.3% | T95T (ACT→ACC) | talB → | transaldolase B |
| RA | 8,528 | T→G | 67.8% | V97V (GTT→GTG) | talB → | transaldolase B |
| RA | 8,531 | T→C | 60.7% | D98D (GAT→GAC) | talB → | transaldolase B |
| RA | 8,534 | G→A | 59.3% | A99A (GCG→GCA) | talB → | transaldolase B |
| RA | 8,540 | T→C | 63.5% | L101L (CTT→CTC) | talB → | transaldolase B |
| RA | 8,561 | A→T | 80.6% | S108S (TCA→TCT) | talB → | transaldolase B |
| RA | 8,564 | T→C | 80.8% | I109I (ATT→ATC) | talB → | transaldolase B |
| RA | 8,573 | A→C | 76.3% | A112A (GCA→GCC) | talB → | transaldolase B |
| RA | 8,576 | A→G | 75.1% | K113K (AAA→AAG) | talB → | transaldolase B |
| RA | 8,580 | C→A | 75.0% | L115M (CTG→ATG) ‡ | talB → | transaldolase B |
| RA | 8,582 | G→C | 75.0% | L115L (CTG→CTC) ‡ | talB → | transaldolase B |
| RA | 8,588 | A→G | 75.7% | K117K (AAA→AAG) | talB → | transaldolase B |
| RA | 8,591 | C→G | 77.1% | L118L (CTC→CTG) | talB → | transaldolase B |
| RA | 8,600 | T→C | 75.7% | D121D (GAT→GAC) | talB → | transaldolase B |
| RA | 8,603 | T→G | 75.0% | A122A (GCT→GCG) | talB → | transaldolase B |
| RA | 8,606 | T→C | 75.1% | G123G (GGT→GGC) | talB → | transaldolase B |
| RA | 8,609 | T→C | 75.0% | I124I (ATT→ATC) | talB → | transaldolase B |
| RA | 8,621 | T→C | 79.2% | R128R (CGT→CGC) | talB → | transaldolase B |
| RA | 8,639 | T→C | 81.3% | A134A (GCT→GCC) | talB → | transaldolase B |
| RA | 8,642 | T→C | 83.0% | S135S (TCT→TCC) | talB → | transaldolase B |
| RA | 8,654 | T→C | 80.9% | G139G (GGT→GGC) | talB → | transaldolase B |
| RA | 8,657 | C→T | 79.3% | I140I (ATC→ATT) | talB → | transaldolase B |
| RA | 8,660 | T→C | 78.8% | R141R (CGT→CGC) | talB → | transaldolase B |
| RA | 8,663 | T→C | 78.9% | A142A (GCT→GCC) | talB → | transaldolase B |
| RA | 8,666 | A→T | 78.9% | A143A (GCA→GCT) | talB → | transaldolase B |
| RA | 8,690 | C→T | 81.0% | I151I (ATC→ATT) | talB → | transaldolase B |
| RA | 8,705 | C→G | 80.7% | T156T (ACC→ACG) | talB → | transaldolase B |
| RA | 8,732 | T→C | 78.3% | R165R (CGT→CGC) | talB → | transaldolase B |
| RA | 8,738 | T→C | 79.9% | C167C (TGT→TGC) | talB → | transaldolase B |
| RA | 8,741 | G→C | 78.7% | A168A (GCG→GCC) | talB → | transaldolase B |
| RA | 8,753 | G→C | 81.2% | V172V (GTG→GTC) | talB → | transaldolase B |
| RA | 8,762 | C→T | 76.6% | I175I (ATC→ATT) | talB → | transaldolase B |
| RA | 8,771 | T→C | 75.4% | F178F (TTT→TTC) | talB → | transaldolase B |
| RA | 8,783 | T→C | 77.5% | I182I (ATT→ATC) | talB → | transaldolase B |
| RA | 8,786 | T→C | 77.1% | L183L (CTT→CTC) | talB → | transaldolase B |
| RA | 8,801 | G→C | 80.6% | A188A (GCG→GCC) | talB → | transaldolase B |
| RA | 8,804 | T→C | 81.8% | N189N (AAT→AAC) | talB → | transaldolase B |
| RA | 8,810 | T→C | 81.4% | D191D (GAT→GAC) | talB → | transaldolase B |
| RA | 8,825 | T→A | 83.6% | A196A (GCT→GCA) | talB → | transaldolase B |
| RA | 8,852 | T→C | 80.0% | S205S (TCT→TCC) | talB → | transaldolase B |
| RA | 8,855 | A→C | 81.8% | V206V (GTA→GTC) | talB → | transaldolase B |
| RA | 8,856 | T→A | 81.7% | S207T (TCT→ACT) ‡ | talB → | transaldolase B |
| RA | 8,857 | C→G | 81.8% | S207C (TCT→TGT) ‡ | talB → | transaldolase B |
| RA | 8,858 | T→C | 82.0% | S207S (TCT→TCC) ‡ | talB → | transaldolase B |
| RA | 8,868 | C→G | 100% | Q211E (CAG→GAG) | talB → | transaldolase B |
| RA | 8,873 | C→T | 100% | Y212Y (TAC→TAT) | talB → | transaldolase B |
| RA | 8,879 | A→G | 82.1% | K214K (AAA→AAG) | talB → | transaldolase B |
| RA | 8,880 | G→C | 82.4% | E215Q (GAG→CAG) | talB → | transaldolase B |
| RA | 8,888 | T→C | 82.1% | G217G (GGT→GGC) | talB → | transaldolase B |
| RA | 8,900 | G→C | 81.0% | V221V (GTG→GTC) | talB → | transaldolase B |
| RA | 8,903 | T→G | 82.5% | V222V (GTT→GTG) | talB → | transaldolase B |
| RA | 8,925 | A→G | 75.6% | I230V (ATC→GTC) ‡ | talB → | transaldolase B |
| RA | 8,927 | C→T | 74.2% | I230I (ATC→ATT) ‡ | talB → | transaldolase B |
| RA | 8,948 | A→T | 71.2% | A237A (GCA→GCT) | talB → | transaldolase B |
| RA | 8,954 | C→T | 74.0% | C239C (TGC→TGT) | talB → | transaldolase B |
| RA | 8,960 | T→C | 72.3% | R241R (CGT→CGC) | talB → | transaldolase B |
| RA | 8,972 | A→C | 67.6% | A245A (GCA→GCC) | talB → | transaldolase B |
| RA | 8,978 | A→G | 65.8% | A247A (GCA→GCG) | talB → | transaldolase B |
| RA | 8,994 | G→T | 71.5% | A253S (GCG→TCG) ‡ | talB → | transaldolase B |
| RA | 8,996 | G→C | 68.6% | A253A (GCG→GCC) ‡ | talB → | transaldolase B |
| RA | 8,999 | G→A | 69.1% | E254E (GAG→GAA) | talB → | transaldolase B |
| RA | 9,008 | G→C | 63.0% | G257G (GGG→GGC) | talB → | transaldolase B |
| RA | 9,011 | T→C | 59.5% | A258A (GCT→GCC) | talB → | transaldolase B |
| RA | 9,012 | A→G | 59.5% | I259V (ATC→GTC) ‡ | talB → | transaldolase B |
| RA | 9,014 | C→T | 58.2% | I259I (ATC→ATT) ‡ | talB → | transaldolase B |
| RA | 9,017 | A→G | 60.2% | E260E (GAA→GAG) | talB → | transaldolase B |
| RA | 9,023 | A→G | 62.9% | K262K (AAA→AAG) | talB → | transaldolase B |
| RA | 9,027 | T→G | 58.1% | S264A (TCT→GCT) ‡ | talB → | transaldolase B |
| RA | 9,028 | C→T | 58.1% | S264F (TCT→TTT) ‡ | talB → | transaldolase B |
| RA | 9,029 | T→A | 59.8% | S264S (TCT→TCA) ‡ | talB → | transaldolase B |
| RA | 9,032 | C→T | 60.1% | Y265Y (TAC→TAT) | talB → | transaldolase B |
| RA | 9,038 | C→T | 63.2% | G267G (GGC→GGT) | talB → | transaldolase B |
| RA | 9,058 | C→A | 70.5% | A274E (GCG→GAG) | talB → | transaldolase B |
| RA | 9,065 | C→T | 72.0% | I276I (ATC→ATT) | talB → | transaldolase B |
| RA | 9,068 | T→C | 69.6% | T277T (ACT→ACC) | talB → | transaldolase B |
| RA | 9,071 | G→A | 68.6% | E278E (GAG→GAA) | talB → | transaldolase B |
| RA | 9,074 | C→T | 67.7% | S279S (TCC→TCT) | talB → | transaldolase B |
| RA | 9,092 | C→T | 65.7% | H285H (CAC→CAT) | talB → | transaldolase B |
| RA | 9,104 | A→G | 62.1% | P289P (CCA→CCG) | talB → | transaldolase B |
| RA | 9,110 | A→G | 62.1% | A291A (GCA→GCG) | talB → | transaldolase B |
| RA | 9,116 | T→C | 56.6% | D293D (GAT→GAC) | talB → | transaldolase B |
| RA | 9,146 | T→G | 46.5% | A303A (GCT→GCG) | talB → | transaldolase B |
| RA | 9,149 | T→C | 44.4% | I304I (ATT→ATC) | talB → | transaldolase B |
| RA | 9,178 | G→A | 42.9% | G314D (GGC→GAC) | talB → | transaldolase B |
| RA | 9,182 | T→A | 40.0% | D315E (GAT→GAA) | talB → | transaldolase B |
| JC | 374,639 | +GCCC | 100% | coding (389/1110 nt) | frmA ← | alcohol dehydrogenase class III/glutathione‑dependent formaldehyde dehydrogenase |
| JC | 750,921 | +GCTATCT | 57.7% | coding (289/390 nt) | sdhC → | succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| RA | 1,484,009 | T→C | 33.3% | pseudogene (213/252 nt) | gapC ← | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| RA | 1,484,072 | G→A | 39.1% | pseudogene (150/252 nt) | gapC ← | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| RA | 1,484,221:1 | +T | 100% | pseudogene (1/252 nt) pseudogene (750/750 nt) |
gapC ← gapC ← |
pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| RA | 1,484,236 | C→G | 100% | pseudogene (735/750 nt) | gapC ← | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| RA | 1,484,239 | T→C | 100% | pseudogene (732/750 nt) | gapC ← | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| RA | 1,484,245 | T→C | 100% | pseudogene (726/750 nt) | gapC ← | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| RA | 1,484,404 | C→T | 100% | pseudogene (567/750 nt) | gapC ← | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| RA | 1,484,856 | A→T | 100% | pseudogene (115/750 nt) | gapC ← | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| RA | 1,484,919 | C→G | 100% | pseudogene (52/750 nt) | gapC ← | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| RA | 1,485,017 | A→G | 100% | intergenic (‑47/‑142) | gapC ← / → cybB | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment)/cytochrome b561 |
| RA | 1,909,758 | C→A | 100% | E12* (GAA→TAA) | proQ ← | RNA chaperone, putative ProP translation regulator |
| RA | 1,977,727 | A→C | 100% | I275R (ATA→AGA) | araG ← | fused L‑arabinose transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 2,960,118:1 | +C | 100% | coding (1676/2247 nt) | ptsP ← | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
| RA | 3,074,454 | A→C | 9.2% | F181V (TTC→GTC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,455 | T→G | 9.2% | A180A (GCA→GCC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,467 | A→G | 15.3% | G176G (GGT→GGC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,473 | C→T | 15.5% | K174K (AAG→AAA) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,478 | G→T | 16.0% | L173M (CTG→ATG) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,481 | T→A | 15.8% | T172S (ACG→TCG) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,482 | A→G | 16.2% | G171G (GGT→GGC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,485 | C→T | 16.1% | A170A (GCG→GCA) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,490 | G→A | 17.7% | L169L (CTG→TTG) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,491 | A→T | 17.5% | S168S (TCT→TCA) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,498 | A→G | 16.4% | V166A (GTT→GCT) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,503 | G→A | 22.0% | H164H (CAC→CAT) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,506 | G→C | 22.2% | S163S (TCC→TCG) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,521 | C→T | 28.3% | M158I (ATG→ATA) ‡ | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,523 | T→A | 28.3% | M158L (ATG→TTG) ‡ | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,538 | T→G | 32.3% | M153L (ATG→CTG) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,563 | A→G | 33.8% | I144I (ATT→ATC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,566 | G→T | 32.8% | D143E (GAC→GAA) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,575 | C→G | 33.9% | P140P (CCG→CCC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,578 | A→G | 34.4% | R139R (CGT→CGC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,584 | A→G | 32.7% | F137F (TTT→TTC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,587 | C→T | 32.3% | Q136Q (CAG→CAA) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,590 | C→G | 28.3% | A135A (GCG→GCC) ‡ | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,591 | G→C | 28.3% | A135G (GCG→GGG) ‡ | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,601 | T→C | 18.2% | T132A (ACG→GCG) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,602 | T→G | 19.6% | K131N (AAA→AAC) ‡ | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,603 | T→C | 18.1% | K131R (AAA→AGA) ‡ | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,604 | T→G | 17.7% | K131Q (AAA→CAA) ‡ | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,608 | T→G | 17.2% | A129A (GCA→GCC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,611 | A→T | 17.5% | I128I (ATT→ATA) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,617 | C→G | 17.2% | M126I (ATG→ATC) ‡ | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,619 | T→A | 17.5% | M126L (ATG→TTG) ‡ | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,623 | G→C | 17.7% | V124V (GTC→GTG) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,626 | T→G | 14.0% | A123A (GCA→GCC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,629 | G→A | 17.5% | N122N (AAC→AAT) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,634 | C→T | 17.4% | A121T (GCC→ACC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,635 | A→G | 17.3% | I120I (ATT→ATC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,638 | A→G | 18.1% | G119G (GGT→GGC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,641 | C→T | 16.5% | Q118Q (CAG→CAA) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,647 | C→T | 11.6% | L116L (CTG→CTA) ‡ | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,649 | G→A | 11.6% | L116L (CTG→TTG) ‡ | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,653 | A→T | 11.4% | G114G (GGT→GGA) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,659 | G→C | 8.7% | T112T (ACC→ACG) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,074,662 | G→C | 8.7% | T111T (ACC→ACG) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,433,446 | C→A | 100% | G315C (GGC→TGC) | rpoA ← | RNA polymerase, alpha subunit |
| RA | 3,729,296 | A→C | 100% | K320Q (AAG→CAG) | xylR → | xylose divergent operon transcriptional activator |
| RA | 4,076,988 | Δ1 bp | 100% | coding (2195/3051 nt) | fdoG ← | formate dehydrogenase‑O, large subunit |
| RA | 4,097,480 | Δ1 bp | 100% | coding (1/963 nt) | pfkA → | 6‑phosphofructokinase I |
| MC JC | 4,097,486 | Δ962 bp | 100% | [pfkA] | [pfkA] | |
| MC JC | 4,224,391 | Δ12 bp | 100% | coding (706‑717/1650 nt) | pgi → | glucosephosphate isomerase |
| MC JC | 4,303,167 | Δ450 bp | 100% | coding (1‑450/450 nt) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 181954 | 182036 | 83 | 2 [1] | [1] 2 | dapD | 2,3,4,5‑tetrahydropyridine‑2‑carboxylate N‑succinyltransferase |
| * | * | ÷ | CP009273 | 327104 | 327138 | 35 | 2 [1] | [1] 2 | betT | choline transporter of high affinity |
| * | * | ÷ | CP009273 | 431151 | 431207 | 57 | 2 [1] | [1] 2 | thiL | thiamine monophosphate kinase |
| * | * | ÷ | CP009273 | 523510 | 523534 | 25 | 2 [1] | [1] 2 | rhsH | pseudogene, Rhs familly protein |
| * | * | ÷ | CP009273 | 552920 | 553059 | 140 | 2 [1] | [1] 2 | folD | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/ 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| * | * | ÷ | CP009273 | 558153 | 558227 | 75 | 2 [1] | [1] 2 | sfmH | FimA homolog |
| * | * | ÷ | CP009273 | 699652 | 699721 | 70 | 2 [1] | [1] 2 | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| * | * | ÷ | CP009273 | 704727 | 704764 | 38 | 2 [1] | [1] 2 | chiP | chitoporin, uptake of chitosugars |
| * | * | ÷ | CP009273 | 1193345 | 1193600 | 256 | 2 [1] | [1] 2 | ymfE | e14 prophage; putative inner membrane protein |
| * | * | ÷ | CP009273 | 1195463 | 1195640 | 178 | 2 [1] | [1] 2 | intE | e14 prophage; putative integrase |
| * | * | ÷ | CP009273 | 1196244 | 1196460 | 217 | 2 [1] | [1] 2 | xisE | e14 prophage; putative excisionase |
| * | * | ÷ | CP009273 | 1196615 | 1196764 | 150 | 2 [1] | [1] 2 | xisE/ymfI | e14 prophage; putative excisionase/e14 prophage; uncharacterized protein |
| * | * | ÷ | CP009273 | 1197050 | 1197195 | 146 | 2 [1] | [1] 2 | ymfI | e14 prophage; uncharacterized protein |
| * | * | ÷ | CP009273 | 1197452 | 1197866 | 415 | 3 [1] | [1] 2 | [ymfJ]–[cohE] | [ymfJ],[cohE] |
| * | * | ÷ | CP009273 | 1198767 | 1199339 | 573 | 2 [1] | [1] 2 | [ymfL]–[ymfM] | [ymfL],[ymfM] |
| * | * | ÷ | CP009273 | 1199433 | 1199589 | 157 | 2 [1] | [1] 2 | ymfM | e14 prophage; uncharacterized protein |
| * | * | ÷ | CP009273 | 1201332 | 1201479 | 148 | 2 [1] | [1] 2 | beeE | pseudogene, portal protein family, e14 prophage;Phage or Prophage Related |
| * | * | ÷ | CP009273 | 1202375 | 1202592 | 218 | 2 [1] | [1] 2 | ymfQ | prohage e14 tail protein homolog |
| * | * | ÷ | CP009273 | 1202624 | 1202827 | 204 | 2 [1] | [1] 2 | ymfQ | prohage e14 tail protein homolog |
| * | * | ÷ | CP009273 | 1203679 | 1203882 | 204 | 2 [1] | [1] 2 | tfaP | e14 prophage; uncharacterized protein |
| * | * | ÷ | CP009273 | 1204256 | 1204396 | 141 | 2 [1] | [1] 2 | tfaE | e14 prophage; putative tail fiber assembly protein |
| * | * | ÷ | CP009273 | 1204636 | 1204906 | 271 | 2 [1] | [1] 2 | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related |
| * | * | ÷ | CP009273 | 1205022 | 1205384 | 363 | 2 [1] | [1] 2 | [stfE]–[pinE] | [stfE],[pinE] |
| * | * | ÷ | CP009273 | 1205858 | 1206058 | 201 | 2 [1] | [1] 2 | mcrA | putative 5‑methylcytosine/5‑hydroxymethylcytosine‑specific restriction nuclease; 5‑methylcytosine DNA binding protein; e14 prophage gene |
| * | * | ÷ | CP009273 | 1275075 | 1275112 | 38 | 2 [1] | [1] 2 | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit |
| * | * | ÷ | CP009273 | 1308947 | 1308955 | 9 | 2 [0] | [0] 13 | ompW/yciE | outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein |
| * | * | ÷ | CP009273 | 1358118 | 1358155 | 38 | 2 [1] | [1] 2 | puuC | gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase |
| * | * | ÷ | CP009273 | 1717710 | 1717739 | 30 | 2 [1] | [1] 2 | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| * | * | ÷ | CP009273 | 1740614 | 1740702 | 89 | 2 [1] | [1] 2 | [valV] | [valV] |
| * | * | ÷ | CP009273 | 1742454 | 1742494 | 41 | 2 [1] | [1] 2 | ydhS | putative oxidoreductase |
| * | * | ÷ | CP009273 | 1823036 | 1823120 | 85 | 2 [1] | [1] 2 | astD | succinylglutamic semialdehyde dehydrogenase |
| * | * | ÷ | CP009273 | 1857019 | 1858030 | 1012 | 2 [1] | [0] 9 | gapA | gapA |
| * | * | ÷ | CP009273 | 1983839 | 1983850 | 12 | 2 [1] | [1] 2 | tyrP | tyrosine transporter |
| * | * | ÷ | CP009273 | 2007117 | 2007242 | 126 | 2 [1] | [1] 2 | fliF | flagellar basal‑body MS‑ring and collar protein |
| * | * | ÷ | CP009273 | 2093044 | 2093549 | 506 | 9 [0] | [1] 2 | [ugd]–[gnd] | [ugd],[gnd] |
| * | * | ÷ | CP009273 | 2093617 | 2096286–2095230 | 1614–2670 | 2 [1] | [1] 2 | [gnd]–[insH1] | [gnd],wbbL,[insH1] |
| * | * | ÷ | CP009273 | 2250340 | 2250492 | 153 | 2 [1] | [1] 2 | psuT | putative nucleoside transporter |
| * | * | ÷ | CP009273 | 2262444 | 2262561 | 118 | 2 [1] | [1] 2 | lpxT | lipid A 1‑diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1‑phosphate phosphotransferase |
| * | * | ÷ | CP009273 | 2293262 | 2293286 | 25 | 2 [1] | [1] 2 | napG | ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) |
| * | * | ÷ | CP009273 | 2328313 | 2328366 | 54 | 2 [1] | [1] 2 | yfaT | DUF1175 family protein, putative host defense protein |
| * | * | ÷ | CP009273 | 2521033 | 2521055 | 23 | 2 [1] | [1] 2 | yfeH | putative inorganic ion transporter |
| * | * | ÷ | CP009273 | 2606962 | 2607025 | 64 | 2 [1] | [1] 2 | hyfR | hydrogenase‑4 transcriptional activator |
| * | * | ÷ | CP009273 | 2937252 | 2937287 | 36 | 2 [1] | [1] 2 | csdA | cysteine sulfinate desulfinase |
| * | * | ÷ | CP009273 | 3051994 | 3052021 | 28 | 2 [1] | [0] 888 | serA/rpiA | D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive |
| * | * | ÷ | CP009273 | 3099991 | 3100007 | 17 | 2 [0] | [0] 2 | nupG | nucleoside transporter |
| * | * | ÷ | CP009273 | 3168015 | 3168115 | 101 | 2 [1] | [1] 2 | parE | DNA topoisomerase IV, subunit B |
| * | * | ÷ | CP009273 | 3349990 | 3350112 | 123 | 2 [1] | [1] 2 | gltB | glutamate synthase, large subunit |
| * | * | ÷ | CP009273 | 3549922 | 3549938 | 17 | 2 [1] | [1] 2 | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | * | ÷ | CP009273 | 3551366 | 3551429 | 64 | 2 [0] | [1] 2 | rtcB | RNA‑splicing ligase |
| * | * | ÷ | CP009273 | 3670073 | 3670134 | 62 | 2 [1] | [1] 2 | yhjG | putative inner membrane‑anchored periplasmic AsmA family protein |
| * | * | ÷ | CP009273 | 3775783 | 3775884 | 102 | 2 [1] | [1] 2 | cysE | serine acetyltransferase |
| * | * | ÷ | CP009273 | 3843894 | 3843971 | 78 | 2 [1] | [1] 2 | uhpA | response regulator in two‑component regulatory system wtih UhpB |
| * | * | ÷ | CP009273 | 3995910 | 3996044 | 135 | 2 [1] | [1] 2 | yigF | putative inner membrane protein |
| * | * | ÷ | CP009273 | 4168600 | 4168674 | 75 | 2 [1] | [1] 2 | rplK | 50S ribosomal subunit protein L11 |
| * | * | ÷ | CP009273 | 4329022 | 4329079 | 58 | 2 [1] | [1] 2 | adiA | arginine decarboxylase |
| * | * | ÷ | CP009273 | 4349845 | 4350005 | 161 | 2 [1] | [1] 2 | [cadB] | [cadB] |
| * | * | ÷ | CP009273 | 4618635 | 4618658 | 24 | 2 [1] | [1] 2 | nadR/yjjK | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor/putative transporter subunit of ABC superfamily: ATP‑binding component |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 320127 = | 16 (1.520) | 3 (0.280) | 3/276 | NT | 15.8% | coding (659/696 nt) | ykgG | LutC family protein; putative electron transport chain YkgEFG component |
| ? | CP009273 | 376716 = | NA (NA) | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | 360104 = | 2 (0.190) | 15 (1.420) | 14/276 | NT | 88.2% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 360180 = | 6 (0.570) | 10 (1.730) +62 bp |
9/152 | NT | 85.9% | intergenic (‑114/+481) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 1308956 = | 0 (0.000) | intergenic (+41/+19) | ompW/yciE | outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein | |||||
| * | ? | CP009273 | 376716 = | NA (NA) | 3 (0.280) | 3/276 | NT | NA | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | = 568073 | NA (NA) | coding (152/456 nt) | ybcN | DLP12 prophage; uncharacterized protein | |||||
| * | ? | CP009273 | 376717 = | NA (NA) | 3 (0.290) | 3/274 | NT | 60.2% | intergenic (‑2/‑90) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | 750105 = | 2 (0.190) | intergenic (‑181/‑528) | gltA/sdhC | citrate synthase/succinate dehydrogenase, membrane subunit, binds cytochrome b556 | |||||
| * | ? | CP009273 | = 378045 | NA (NA) | 7 (0.670) | 7/274 | NT | 63.8% | intergenic (+10/+2) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
| ? | CP009273 | = 750111 | 4 (0.380) | intergenic (‑187/‑522) | gltA/sdhC | citrate synthase/succinate dehydrogenase, membrane subunit, binds cytochrome b556 | |||||
| * | ? | CP009273 | 454244 = | 0 (0.000) | 11 (1.080) | 10/268 | NT | 100% | intergenic (+88/‑100) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | CP009273 | 603467 = | NA (NA) | intergenic (+23/‑54) | hokE/insL1 | toxic polypeptide, small/IS186 transposase | |||||
| * | ? | CP009273 | = 454255 | 1 (0.090) | 7 (0.680) | 7/268 | NT | 87.8% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | CP009273 | = 604803 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | CP009273 | = 1092330 | 3 (0.280) | 5 (0.480) | 5/274 | NT | 62.7% | intergenic (+45/+691) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1645804 | NA (NA) | intergenic (+10/‑4) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1483968 = | NA (NA) | 9 (0.850) | 9/276 | NT | 100% | intergenic (+40/+2) | aldA/gapC | aldehyde dehydrogenase A, NAD‑linked/pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| ? | CP009273 | 1858031 = | 0 (0.000) | intergenic (+8/‑76) | gapA/yeaD | glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein | |||||
| * | ? | CP009273 | 1551001 = | 6 (0.570) | 6 (0.570) | 6/274 | NT | 42.9% | coding (120/432 nt) | osmC | lipoyl‑dependent Cys‑based peroxidase, hydroperoxide resistance; salt‑shock inducible membrane protein; peroxiredoxin |
| ? | CP009273 | = 1558191 | 10 (0.960) | coding (1800/2400 nt) | dosP | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator | |||||
| * | ? | CP009273 | = 2093043 | 0 (0.000) | 8 (0.760) | 8/276 | NT | 100% | coding (52/1167 nt) | ugd | UDP‑glucose 6‑dehydrogenase |
| ? | CP009273 | 2095230 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 3052022 = | 0 (0.000) | 817 (78.660) +AG |
190/272 | NT | 100% | intergenic (‑253/+3) | serA/rpiA | D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive |
| ? | CP009273 | 4161679 = | NA (NA) | noncoding (115/120 nt) | rrfB | 5S ribosomal RNA of rrnB operon | |||||
| * | ? | CP009273 | 3060603 = | 5 (0.470) | 47 (4.460) | 42/276 | NT | 90.4% | intergenic (‑71/+96) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| ? | CP009273 | = 3124699 | NA (NA) | intergenic (+146/+1) | insH1/yghQ | IS5 transposase and trans‑activator/putative inner membrane polysaccharide flippase | |||||
| * | ? | CP009273 | 3179455 = | NA (NA) | 9 (0.850) | 9/276 | NT | 100% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3426721 | 0 (0.000) | coding (199/1125 nt) | smf | DNA recombination‑mediator A family protein | |||||
| * | ? | CP009273 | = 3180785 | NA (NA) | 12 (1.140) | 12/276 | NT | 100% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3426717 = | 0 (0.000) | coding (203/1125 nt) | smf | DNA recombination‑mediator A family protein | |||||