mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | KT2440 | 4,845,478 | 0 | T | G | 60.0% | ‑1.2 / 11.2 | 23 | intergenic (+47/+72) | apt/recR | Adenine phosphoribosyltransferase/Recombination protein RecR |
| * | KT2440 | 1,544,643 | 0 | T | G | 55.2% | 11.3 / 26.1 | 31 | Q412P (CAG→CCG) | pykA | Pyruvate kinase II |
| * | KT2440 | 4,884,498 | 0 | T | G | 53.3% | 5.8 / 12.6 | 15 | intergenic (+75/‑164) | glxR/ttuD | 2‑hydroxy‑3‑oxopropionate reductase/Putative hydroxypyruvate reductase |
| * | KT2440 | 3,255,897 | 0 | A | C | 52.9% | ‑0.0 / 10.6 | 18 | intergenic (‑152/+72) | pnuC/mcpP | Nicotinamide riboside transporter PnuC/Methyl‑accepting chemotaxis protein McpP |
| * | KT2440 | 1,974,160 | 0 | T | G | 52.4% | 5.9 / 18.7 | 21 | intergenic (+42/‑258) | rpsA/ihfB | 30S ribosomal protein S1/Integration host factor subunit beta |
| * | KT2440 | 1,524,732 | 0 | T | G | 52.0% | ‑1.9 / 11.9 | 25 | Q67P (CAG→CCG) | CJ019_01439 | hypothetical protein |
| * | KT2440 | 4,245,145 | 0 | A | C | 45.8% | 27.8 / 14.9 | 62 | L178R (CTG→CGG) | CJ019_03982 | Crotonyl‑CoA hydratase |
| * | KT2440 | 4,135,607 | 0 | A | C | 39.2% | 50.1 / 15.6 | 81 | Q32P (CAG→CCG) | tgnC | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| * | KT2440 | 5,227,158 | 0 | T | G | 34.2% | 38.7 / 10.5 | 38 | F60V (TTT→GTT) | fecI_10 | putative RNA polymerase sigma factor FecI |
| * | KT2440 | 6,039,837 | 0 | C | A | 33.3% | 35.9 / 21.9 | 48 | A37S (GCC→TCC) | puuD_3 | Gamma‑glutamyl‑gamma‑aminobutyrate hydrolasePuuD |
| * | KT2440 | 5,227,156 | 0 | C | G | 31.6% | 68.8 / 12.2 | 38 | A59G (GCG→GGG) | fecI_10 | putative RNA polymerase sigma factor FecI |
| * | KT2440 | 3,673,790 | 0 | G | C | 24.3% | 85.2 / 10.1 | 37 | intergenic (+19/+25) | CJ019_03485/panS | hypothetical protein/Pantothenate precursors transporter PanS |
| * | KT2440 | 4,218,068 | 0 | A | C | 24.0% | 220.1 / 18.2 | 121 | intergenic (‑553/+286) | CJ019_03957/CJ019_03958 | hypothetical protein/hypothetical protein |
| * | KT2440 | 4,666,750 | 0 | A | T | 23.8% | 76.9 / 10.1 | 42 | intergenic (‑95/‑126) | lasR/btuB_4 | Transcriptional activator protein LasR/Vitamin B12 transporter BtuB |
| * | KT2440 | 2,151,957 | 0 | G | T | 23.3% | 50.0 / 14.5 | 43 | intergenic (+69/‑119) | acpP_1/fabF_1 | Acyl carrier protein/3‑oxoacyl‑[acyl‑carrier‑protein] synthase 2 |
| * | KT2440 | 4,218,062 | 0 | T | A | 20.3% | 201.4 / 21.5 | 117 | intergenic (‑547/+292) | CJ019_03957/CJ019_03958 | hypothetical protein/hypothetical protein |