mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 431,505 | T→C | 7.4% | S77P (TCA→CCA) | SAS0387 → | exotoxin |
| RA | BX571857 | 545,010 | G→A | 5.9% | intergenic (+413/+298) | unknown → / ← SAS0475 | –/GntR family regulatory protein |
| RA | BX571857 | 605,157 | T→C | 11.6% | D1007D (GAT→GAC) | SAS0521 → | bone sialoprotein‑binding protein |
| RA | BX571857 | 605,193 | T→C | 6.0% | D1019D (GAT→GAC) | SAS0521 → | bone sialoprotein‑binding protein |
| RA | BX571857 | 739,478 | G→A | 10.3% | T153T (ACG→ACA) | SAS0661 → | putative exported protein |
| RA | BX571857 | 1,167,297 | A→G | 5.2% | K71R (AAA→AGA) | SAS1093 → | hypothetical protein |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| RA | BX571857 | 1,434,365 | G→A | 13.2% | G144S (GGT→AGT) | SAS1338 → | putative tetrahydrodipicolinate acetyltransferase |
| RA | BX571857 | 1,868,342 | G→A | 100% | G129D (GGT→GAT) | SAS1720 → | putative membrane protein |
| RA | BX571857 | 1,937,435 | A→G | 5.1% | noncoding (62/90 nt) | tRNA Ser anticodon TGA_ Cove score 61.04 ← | tRNA‑Ser |
| RA | BX571857 | 2,338,045 | G→C | 10.4% | R229P (CGT→CCT) | SAS2184 → | urease accessory protein UreD |
| RA | BX571858 | 20,628:1 | +G | 100% | coding (288/306 nt) | pSAS24 → | putative exported protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BX571858 | 20652 | 20652 | 1 | 340 [0] | [0] NA | pSAS24/– | putative exported protein/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | 601531 = | 243 (1.100) | 45 (0.220) | 3/164 | NT | 16.4% | coding (3886/4098 nt) | SAS0520 | putative surface anchored protein |
| ? | BX571857 | = 604941 | NA (NA) | coding (2805/3426 nt) | SAS0521 | bone sialoprotein‑binding protein | |||||
| * | ? | BX571857 | 980997 = | NA (NA) | 30 (0.200) | 25/120 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
| * | ? | BX571858 | 1 = | 0 (0.000) | 299 (1.230) | 125/172 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||