mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.6% | 83.1 / 39.6 | 70 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3683802 = | 29 (0.740) | 5 (0.130) | 5/272 | 4.7 | 15.7% | coding (1817/1989 nt) | yhjK | cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913 | 3683818 = | 26 (0.690) | coding (1801/1989 nt) | yhjK | cyclic‑di‑GMP phosphodiesterase | |||||
| * | ? | NC_000913 | = 3790299 | 36 (0.920) | 4 (0.110) | 4/266 | 5.1 | 10.8% | intergenic (‑218/+21) | waaH/tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| ? | NC_000913 | = 3790303 | 32 (0.870) | intergenic (‑222/+17) | waaH/tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | = 3877665 | NA (NA) | 3 (0.080) | 3/270 | 5.7 | NA | noncoding (80/98 nt) | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3877676 | NA (NA) | noncoding (91/98 nt) | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 2775873 = | 33 (0.840) | 3 (0.080) | 3/268 | 5.7 | 8.7% | intergenic (+57/‑46) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein |
| ? | NC_000913 | 2775896 = | 32 (0.860) | intergenic (+80/‑23) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein | |||||
| * | ? | NC_000913 | = 609415 | 38 (0.970) | 3 (0.080) | 3/268 | 5.7 | 7.7% | intergenic (+238/+44) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
| ? | NC_000913 | = 609431 | 36 (0.970) | intergenic (+254/+28) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | = 313275 | 46 (1.170) | 3 (0.080) | 3/272 | 5.7 | 6.5% | intergenic (‑33/+441) | ykgR/ykgP | uncharacterized protein/pseudogene, oxidoreductase family |
| ? | NC_000913 | = 313278 | 42 (1.120) | intergenic (‑36/+438) | ykgR/ykgP | uncharacterized protein/pseudogene, oxidoreductase family | |||||
| * | ? | NC_000913 | 1097372 = | NA (NA) | 3 (0.080) | 3/278 | 5.8 | 9.3% | intergenic (+543/+193) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097531 = | 30 (0.760) | intergenic (+702/+34) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097172 = | NA (NA) | 3 (0.080) | 3/278 | 5.8 | 12.7% | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097188 = | 21 (0.540) | intergenic (+359/+377) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097007 = | 34 (0.870) | 3 (0.080) | 3/278 | 5.8 | 8.7% | intergenic (+178/+558) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097534 = | 30 (0.780) | intergenic (+705/+31) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097007 = | 34 (0.870) | 3 (0.080) | 3/278 | 5.8 | 8.3% | intergenic (+178/+558) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097172 = | NA (NA) | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||