mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 304 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4638146 | 130 (0.940) | 10 (0.080) | 7/156 | NT | 7.2% | intergenic (+26/‑32) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein |
| ? | NC_000913 | = 4638170 | 144 (1.190) | intergenic (+50/‑8) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein | |||||
| * | ? | NC_000913 | = 4607047 | 158 (1.140) | 13 (0.100) | 7/168 | NT | 7.7% | coding (654/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 4607088 | 164 (1.260) | coding (613/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 4580042 | 122 (0.880) | 10 (0.080) | 9/164 | NT | 7.9% | intergenic (‑202/+26) | symE/hsdS | toxic peptide regulated by antisense sRNA symR/specificity determinant for hsdM and hsdR |
| ? | NC_000913 | = 4580047 | 120 (0.940) | intergenic (‑207/+21) | symE/hsdS | toxic peptide regulated by antisense sRNA symR/specificity determinant for hsdM and hsdR | |||||
| * | ? | NC_000913 | = 4571450 | 141 (1.020) | 16 (0.120) | 9/166 | NT | 10.9% | coding (125/1413 nt) | yjiR | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| ? | NC_000913 | = 4571464 | 131 (1.020) | coding (111/1413 nt) | yjiR | putative DNA‑binding transcriptional regulator/putative aminotransferase | |||||
| * | ? | NC_000913 | 4554385 = | 153 (1.110) | 10 (0.080) | 8/160 | NT | 7.2% | intergenic (+24/‑191) | uxuB/uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| ? | NC_000913 | 4554419 = | 121 (0.970) | intergenic (+58/‑157) | uxuB/uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor | |||||
| * | ? | NC_000913 | = 4515778 | 135 (0.980) | 9 (0.070) | 6/166 | NT | 6.4% | coding (900/2325 nt) | fecA | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| ? | NC_000913 | = 4515794 | 139 (1.080) | coding (884/2325 nt) | fecA | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein | |||||
| * | ? | NC_000913 | = 4513364 | 155 (1.120) | 14 (0.110) | 10/164 | NT | 8.4% | coding (46/999 nt) | fecC | ferric citrate ABC transporter permease |
| ? | NC_000913 | = 4513381 | 164 (1.290) | coding (29/999 nt) | fecC | ferric citrate ABC transporter permease | |||||
| * | ? | NC_000913 | = 4455191 | 144 (1.040) | 6 (0.050) | 5/168 | NT | 4.2% | coding (419/999 nt) | fbp | fructose‑1,6‑bisphosphatase I |
| ? | NC_000913 | = 4455214 | 138 (1.060) | coding (396/999 nt) | fbp | fructose‑1,6‑bisphosphatase I | |||||
| * | ? | NC_000913 | = 4449524 | 155 (1.120) | 7 (0.050) | 5/168 | NT | 4.4% | coding (129/531 nt) | ppa | inorganic pyrophosphatase |
| ? | NC_000913 | = 4449539 | 158 (1.210) | coding (114/531 nt) | ppa | inorganic pyrophosphatase | |||||
| * | ? | NC_000913 | 4440123 = | 138 (1.000) | 9 (0.070) | 5/168 | NT | 6.8% | coding (1093/1344 nt) | ytfL | UPF0053 family inner membrane protein |
| ? | NC_000913 | 4440152 = | 117 (0.900) | coding (1064/1344 nt) | ytfL | UPF0053 family inner membrane protein | |||||