mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 1250 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4639713 | 84 (0.970) | 3 (0.040) | 3/172 | NT | 3.6% | coding (594/717 nt) | arcA | response regulator in two‑component regulatory system with ArcB or CpxA |
| ? | NC_000913 | = 4639734 | 80 (0.950) | coding (573/717 nt) | arcA | response regulator in two‑component regulatory system with ArcB or CpxA | |||||
| * | ? | NC_000913 | 4634391 = | 92 (1.060) | 3 (0.040) | 3/164 | NT | 3.4% | coding (595/648 nt) | ytjC | phosphatase |
| ? | NC_000913 | 4634423 = | 84 (1.050) | coding (627/648 nt) | ytjC | phosphatase | |||||
| * | ? | NC_000913 | = 4627892 | 65 (0.750) | 4 (0.050) | 3/164 | NT | 5.9% | coding (578/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| ? | NC_000913 | = 4627903 | 68 (0.850) | coding (589/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor | |||||
| * | ? | NC_000913 | 4627662 = | 89 (1.020) | 4 (0.050) | 3/170 | NT | 4.7% | coding (348/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| ? | NC_000913 | 4627688 = | 78 (0.940) | coding (374/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor | |||||
| * | ? | NC_000913 | = 4627204 | 79 (0.910) | 3 (0.040) | 3/162 | NT | 3.7% | coding (1293/1383 nt) | radA | DNA repair protein |
| ? | NC_000913 | = 4627223 | 83 (1.050) | coding (1312/1383 nt) | radA | DNA repair protein | |||||
| * | ? | NC_000913 | 4618165 = | NA (NA) | 4 (0.050) | 4/164 | NT | 5.7% | noncoding (49/82 nt) | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4618192 = | 66 (0.820) | noncoding (76/82 nt) | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 4615673 = | 101 (1.160) | 4 (0.050) | 4/162 | NT | 4.2% | coding (1393/1551 nt) | yjjI | DUF3029 family protein, putative glycine radical enzyme |
| ? | NC_000913 | 4615699 = | 89 (1.130) | coding (1367/1551 nt) | yjjI | DUF3029 family protein, putative glycine radical enzyme | |||||
| * | ? | NC_000913 | = 4614762 | 105 (1.210) | 4 (0.050) | 4/170 | NT | 3.8% | coding (782/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | = 4614786 | 100 (1.200) | coding (758/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | = 4614267 | 100 (1.150) | 7 (0.090) | 5/164 | NT | 6.7% | noncoding (11/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | = 4614283 | 104 (1.300) | noncoding (27/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | 4607519 = | 93 (1.070) | 4 (0.050) | 4/172 | NT | 4.2% | coding (182/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 4607556 = | 91 (1.080) | coding (145/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||