mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 1036 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4638367 | 86 (1.050) | 3 (0.040) | 3/166 | NT | 3.5% | coding (190/1353 nt) | creD | inner membrane protein |
| ? | NC_000913 | = 4638387 | 85 (1.120) | coding (210/1353 nt) | creD | inner membrane protein | |||||
| * | ? | NC_000913 | 4636324 = | 74 (0.910) | 3 (0.040) | 3/164 | NT | 4.3% | coding (318/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | 4636375 = | 64 (0.850) | coding (369/690 nt) | creB | response regulator in two‑component regulatory system with CreC | |||||
| * | ? | NC_000913 | 4635837 = | 67 (0.820) | 4 (0.050) | 3/170 | NT | 5.3% | coding (317/474 nt) | creA | putative periplasmic protein |
| ? | NC_000913 | 4635885 = | 80 (1.030) | coding (365/474 nt) | creA | putative periplasmic protein | |||||
| * | ? | NC_000913 | = 4627444 | 96 (1.180) | 3 (0.040) | 3/162 | NT | 3.3% | coding (130/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| ? | NC_000913 | = 4627477 | 90 (1.210) | coding (163/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor | |||||
| * | ? | NC_000913 | 4617641 = | 96 (1.180) | 5 (0.060) | 3/170 | NT | 5.4% | coding (319/780 nt) | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked |
| ? | NC_000913 | 4617663 = | 83 (1.070) | coding (341/780 nt) | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked | |||||
| * | ? | NC_000913 | 4614608 = | 110 (1.350) | 3 (0.040) | 3/164 | NT | 3.0% | noncoding (352/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | 4614641 = | 93 (1.240) | noncoding (385/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | 4614132 = | 96 (1.180) | 3 (0.040) | 3/160 | NT | 3.4% | coding (652/780 nt) | yjjV | putative DNase |
| ? | NC_000913 | 4614163 = | 84 (1.150) | coding (683/780 nt) | yjjV | putative DNase | |||||
| * | ? | NC_000913 | 4607519 = | 99 (1.210) | 7 (0.090) | 5/172 | NT | 7.2% | coding (182/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 4607556 = | 85 (1.080) | coding (145/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 4607047 | 70 (0.860) | 7 (0.090) | 6/168 | NT | 9.4% | coding (654/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 4607088 | 69 (0.900) | coding (613/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 4602757 = | 92 (1.130) | 5 (0.070) | 4/164 | NT | 6.0% | coding (102/771 nt) | yjjP | DUF1212 family inner membrane protein |
| ? | NC_000913 | 4602785 = | 71 (0.950) | coding (74/771 nt) | yjjP | DUF1212 family inner membrane protein | |||||