breseq  version 0.27.1  revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence (highest frequency 20 of 56 shown)
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,151,7590GA47.9% 49.4 / inf 383E49K (GAA→AAA) acpPacyl carrier protein (ACP)
*NC_0009134,187,6670TA47.8% 73.2 / inf 471F773Y (TTC→TAC) rpoCRNA polymerase, beta prime subunit
*NC_0009134,186,4250CT46.7% 125.7 / inf 486P359L (CCA→CTA) rpoCRNA polymerase, beta prime subunit
*NC_0009132,610,1070GA45.8% 136.9 / inf 417E541K (GAG→AAG) hyfGhydrogenase 4, subunit
*NC_0009131,907,3270GA45.6% 135.0 / inf 453Q37* (CAG→TAG) cspCstress protein, member of the CspA‑family
*NC_0009134,213,0510AC44.4% 30.1 / 207.3 126noncoding (12/120 nt)rrfE5S ribosomal RNA of rrnE operon
*NC_0009133,473,6120AC43.6% 116.6 / inf 496L157* (TTA→TGA) rpsG30S ribosomal subunit protein S7
*NC_0009132,947,5910A.40.8% 202.8 / 159.2 98intergenic (+18/‑16)metW/metVtRNA‑Met/tRNA‑Met
*NC_0009133,269,9940GT36.0% 188.7 / 41.1 196intergenic (+392/+631)yhaC/garKpentapetide repeats‑related protein/glycerate kinase I
*NC_0009131,674,7710G.34.1% 570.6 / 313.0 228coding (859/1035 nt)tqsApheromone AI‑2 transporter
*NC_0009131,674,7730G.33.9% 576.6 / 313.0 228coding (861/1035 nt)tqsApheromone AI‑2 transporter
*NC_0009131,674,7720G.33.8% 576.9 / 313.0 228coding (860/1035 nt)tqsApheromone AI‑2 transporter
*NC_0009131,674,7740C.33.3% 584.3 / 312.0 231coding (862/1035 nt)tqsApheromone AI‑2 transporter
*NC_0009131,674,7680C.33.2% 591.6 / 311.8 232coding (856/1035 nt)tqsApheromone AI‑2 transporter
*NC_0009131,674,7700T.33.2% 554.9 / 302.2 232coding (858/1035 nt)tqsApheromone AI‑2 transporter
*NC_0009131,674,7690G.33.1% 591.9 / 312.1 233coding (857/1035 nt)tqsApheromone AI‑2 transporter
*NC_0009131,674,7640G.31.7% 637.9 / 310.3 244coding (852/1035 nt)tqsApheromone AI‑2 transporter
*NC_0009131,674,7650G.31.7% 631.0 / 310.3 244coding (853/1035 nt)tqsApheromone AI‑2 transporter
*NC_0009131,674,7660G.31.6% 634.2 / 310.3 244coding (854/1035 nt)tqsApheromone AI‑2 transporter
*NC_0009131,674,7670G.31.6% 646.9 / 310.3 244coding (855/1035 nt)tqsApheromone AI‑2 transporter

Marginal new junction evidence (lowest skew 10 of 50 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1104115191 (0.430)203 (0.460) 147/298 3.2 51.1% coding (165/456 nt) csgB curlin nucleator protein, minor subunit in curli complex
?NC_000913 1104420 = 198 (0.450)intergenic (+14/‑27) csgB/csgA curlin nucleator protein, minor subunit in curli complex/curlin subunit, amyloid curli fibers, cryptic
* ? NC_000913 = 3366750NA (NA)222 (0.500) 135/300 4.4 42.7% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 3393816 = 298 (0.680)coding (2443/3801 nt) yhdP DUF3971‑AsmA2 domains protein
* ? NC_000913 = 2290113NA (NA)294 (0.670) 133/300 4.6 51.5% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 2413638 = 277 (0.630)coding (169/1203 nt) ackA acetate kinase A and propionate kinase 2
* ? NC_000913 2288919 =NA (NA)227 (0.520) 132/298 4.6 45.6% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 = 2413641 271 (0.620)coding (172/1203 nt) ackA acetate kinase A and propionate kinase 2
* ? NC_000913 = 1674768158 (0.360)178 (0.420) 126/288 4.8 54.5% coding (856/1035 nt) tqsA pheromone AI‑2 transporter
?NC_000913 1674781 = 146 (0.350)coding (869/1035 nt) tqsA pheromone AI‑2 transporter
* ? NC_000913 4542682 =476 (1.080)68 (0.160) 61/282 15.8 12.9% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 469 (1.130)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 4542690469 (1.060)66 (0.160) 60/282 16.1 12.7% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 466 (1.130)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 696863 =137 (0.310)108 (0.270)
+GAAGAAACAATC
48/276 19.0 30.0% intergenic (‑33/+2) glnW/glnU tRNA‑Gln/tRNA‑Gln
?NC_000913 = 697134 411 (0.930)intergenic (‑1/+379) metT/asnB tRNA‑Met/asparagine synthetase B
* ? NC_000913 = 2067353NA (NA)214 (0.500) 49/292 19.9 42.5% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 3393816 = 298 (0.680)coding (2443/3801 nt) yhdP DUF3971‑AsmA2 domains protein
* ? NC_000913 = 2067353NA (NA)172 (0.390) 48/300 20.7 38.3% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 2413638 = 277 (0.630)coding (169/1203 nt) ackA acetate kinase A and propionate kinase 2