mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 44 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 377,431 | 1 | . | A | 79.1% | 91.3 / 46.7 | 67 | intergenic (+120/+104) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| * | NC_000913 | 377,432 | 0 | C | G | 79.1% | 32.4 / 39.5 | 67 | intergenic (+121/+103) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| * | NC_000913 | 696,470 | 0 | C | T | 78.6% | 571.2 / 126.4 | 292 | noncoding (35/75 nt) | glnX | tRNA‑Gln |
| * | NC_000913 | 4,040,623 | 0 | G | A | 52.6% | 298.6 / inf | 880 | noncoding (107/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,171,753 | 0 | G | A | 45.8% | 17.9 / 23.9 | 27 | noncoding (117/120 nt) | rrfB | 5S ribosomal RNA of rrnB operon |
| * | NC_000913 | 2,947,591 | 0 | A | . | 38.6% | 175.1 / 122.7 | 83 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| * | NC_000913 | 2,947,481 | 1 | . | A | 37.3% | 113.1 / 135.4 | 67 | intergenic (+18/‑16) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | NC_000913 | 4,295,961 | 0 | C | T | 35.3% | 386.8 / inf | 428 | intergenic (+167/+475) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,171,767 | 0 | G | A | 35.0% | 26.8 / 14.8 | 21 | intergenic (+11/‑290) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| * | NC_000913 | 2,947,467 | 0 | A | C | 34.2% | 188.9 / 150.8 | 120 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | NC_000913 | 3,269,994 | 0 | G | T | 31.9% | 188.4 / 25.4 | 161 | intergenic (+392/+631) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.6% | 541.2 / inf | 539 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,552,191 | 0 | C | A | 29.2% | 739.3 / 113.0 | 431 | intergenic (+200/+207) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| * | NC_000913 | 2,818,158 | 0 | T | A | 29.0% | 274.5 / 116.9 | 187 | intergenic (‑23/+40) | argZ/argY | tRNA‑Arg/tRNA‑Arg |
| * | NC_000913 | 2,304,522 | 0 | G | T | 28.9% | 126.7 / 76.3 | 115 | intergenic (+129/+586) | eco/mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| * | NC_000913 | 1,708,901 | 0 | A | C | 28.6% | 221.4 / 56.0 | 219 | R661R (CGA→CGC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 2,304,523 | 0 | G | C | 28.3% | 133.9 / 79.8 | 115 | intergenic (+130/+585) | eco/mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| * | NC_000913 | 1,708,930 | 0 | C | A | 28.1% | 378.2 / 55.9 | 230 | P671Q (CCG→CAG) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 422,429 | 0 | T | G | 27.7% | 628.6 / 90.9 | 356 | intergenic (+70/‑89) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| * | NC_000913 | 3,270,167 | 0 | C | G | 27.2% | 327.5 / 53.4 | 243 | intergenic (+565/+458) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| Marginal new junction evidence (lowest skew 10 of 34 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 781446 | 242 (0.570) | 56 (0.150) | 40/260 | 28.3 | 17.4% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | 2521487 = | 323 (0.880) | intergenic (+159/+106) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913 | = 2357690 | 308 (0.730) | 64 (0.160) +AATTAGAAGGTT |
39/276 | 30.6 | 18.4% | coding (787/900 nt) | yfaD | transposase_31 family protein |
| ? | NC_000913 | 2357691 = | 308 (0.730) | coding (788/900 nt) | yfaD | transposase_31 family protein | |||||
| * | ? | NC_000913 | = 781446 | 242 (0.570) | 49 (0.130) | 33/260 | 31.8 | 15.5% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | 781811 = | 326 (0.890) | intergenic (+159/‑274) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | NC_000913 | 780554 = | 437 (1.040) | 116 (0.280) +G |
41/298 | 32.1 | 30.8% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 87 (0.210) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 780554 = | 437 (1.040) | 91 (0.220) +GAAG |
39/292 | 32.4 | 24.0% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 156 (0.370) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 781577 = | 286 (0.680) | 228 (0.540) +G |
40/298 | 32.6 | 55.2% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 87 (0.210) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 781369 = | 266 (0.630) | 159 (0.380) +G |
40/298 | 32.6 | 47.6% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 87 (0.210) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 781577 = | 286 (0.680) | 203 (0.490) +GAAG |
38/292 | 32.9 | 48.6% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 156 (0.370) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 781369 = | 266 (0.630) | 131 (0.320) +GAAG |
38/292 | 32.9 | 39.0% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 156 (0.370) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | = 1287084 | 170 (0.400) | 56 (0.150) | 30/260 | 33.5 | 19.4% | intergenic (+558/+3) | narI/tpr | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/protamine‑like protein |
| ? | NC_000913 | 1287557 = | 317 (0.870) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||