mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 22 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,657,292 | 0 | G | A | 73.6% | 264.1 / 111.3 | 159 | E521E (GAG→GAA) | ppk | polyphosphate kinase, component of RNA degradosome |
| * | minE | 1,763,580 | 0 | G | A | 69.8% | 6.0 / 100.3 | 119 | noncoding (264/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 1,763,537 | 0 | G | A | 69.3% | 3.3 / 98.1 | 114 | noncoding (307/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 1,856,878 | 0 | T | . | 62.5% | 25.3 / 51.0 | 32 | intergenic (‑177/+182) | ygcB/cysH | conserved hypothetical protein, member of DEAD box family/3'‑phosphoadenosine 5'‑phosphosulfate reductase |
| * | minE | 1,307,020 | 0 | T | C | 58.7% | 51.4 / 108.3 | 92 | P192P (CCA→CCG) | yeeF | predicted amino‑acid transporter |
| * | minE | 1,926,875 | 1 | . | C | 50.0% | 17.0 / 18.7 | 12 | coding (818/936 nt) | lysR | DNA‑binding transcriptional dual regulator |
| * | minE | 2,043,419 | 1 | . | A | 47.7% | 7.0 / 183.9 | 88 | coding (499/630 nt) | yqiJ | predicted inner membrane protein |
| * | minE | 1,513,727 | 1 | . | A | 43.5% | 4.9 / 95.8 | 46 | coding (152/570 nt) | ubiX | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| * | minE | 585,755 | 0 | G | T | 36.0% | 78.0 / 44.1 | 50 | A47E (GCG→GAG) | cydC | fused cysteine transporter subunits and membrane component and ATP‑binding component of ABC superfamily |
| * | minE | 1,601,390 | 1 | . | A | 35.7% | 28.7 / 40.8 | 28 | coding (231/1305 nt) | yfeW | predicted periplasmic esterase |
| * | minE | 740,595 | 1 | . | T | 34.4% | 72.3 / 92.8 | 61 | coding (212/2190 nt) | fhuE | ferric‑rhodotorulic acid outer membrane transporter |
| * | minE | 2,965,801 | 0 | C | A | 32.7% | 97.0 / 38.2 | 52 | P428Q (CCG→CAG) | deoA | thymidine phosphorylase |
| * | minE | 1,251,437 | 0 | C | T | 31.0% | 72.8 / 47.3 | 58 | E211K (GAA→AAA) | yebC | conserved hypothetical protein |
| * | minE | 933,148 | 0 | C | . | 30.8% | 344.6 / 147.3 | 133 | coding (645/3048 nt) | fdnG | formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| * | minE | 2,349,383 | 0 | A | G | 30.0% | 21.5 / 11.8 | 20 | R755R (CGT→CGC) | polA | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease |
| * | minE | 2,349,389 | 0 | T | C | 30.0% | 23.4 / 12.4 | 20 | Q753Q (CAA→CAG) | polA | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease |
| * | minE | 2,349,392 | 0 | C | G | 30.0% | 29.9 / 10.2 | 20 | E752D (GAG→GAC) | polA | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease |
| * | minE | 2,349,397 | 0 | T | C | 30.0% | 23.7 / 12.4 | 20 | S751G (AGC→GGC) | polA | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease |
| * | minE | 2,349,399 | 0 | G | C | 30.0% | 25.2 / 13.4 | 20 | T750S (ACC→AGC) | polA | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease |
| * | minE | 1,075,148 | 1 | . | T | 27.9% | 75.3 / 51.9 | 43 | coding (327/1605 nt) | ydhS | conserved hypothetical protein with FAD/NAD(P)‑binding domain |