mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 167 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,148,462 | 0 | G | A | 68.4% | 49.4 / 29.9 | 38 | A1020A (GCG→GCA) | yegE | predicted diguanylate cyclase, GGDEF domain signalling protein |
| * | W3110S.gb | 746,141 | 0 | A | T | 67.7% | 36.7 / 30.3 | 34 | E185D (GAA→GAT) | ybgL | predicted lactam utilization protein |
| * | W3110S.gb | 746,143 | 0 | A | G | 67.7% | 40.8 / 28.1 | 34 | Q186R (CAG→CGG) | ybgL | predicted lactam utilization protein |
| * | W3110S.gb | 746,145 | 0 | G | A | 67.7% | 39.1 / 28.6 | 34 | A187T (GCG→ACG) | ybgL | predicted lactam utilization protein |
| * | W3110S.gb | 1,974,376 | 0 | C | T | 66.7% | 29.9 / 25.1 | 30 | L10L (CTG→CTA) | tar | methyl‑accepting chemotaxis protein II |
| * | W3110S.gb | 2,543,104 | 1 | . | T | 63.2% | 30.5 / 22.9 | 19 | coding (317/375 nt) | yfeK | hypothetical protein |
| * | W3110S.gb | 2,650,789 | 0 | A | G | 63.2% | 13.1 / 15.6 | 19 | V52A (GTG→GCG) | yfhM | conserved hypothetical protein |
| * | W3110S.gb | 2,650,794 | 0 | G | A | 63.2% | 14.3 / 15.2 | 19 | L50L (CTC→CTT) | yfhM | conserved hypothetical protein |
| * | W3110S.gb | 2,650,797 | 0 | T | C | 63.2% | 14.3 / 15.6 | 19 | K49K (AAA→AAG) | yfhM | conserved hypothetical protein |
| * | W3110S.gb | 52,474 | 1 | . | A | 61.3% | 52.7 / 43.8 | 31 | coding (943/990 nt) | pdxA | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| * | W3110S.gb | 978,819 | 0 | A | T | 61.2% | 37.1 / 58.1 | 49 | D691V (GAC→GTC) | mukB | fused chromosome partitioning proteins |
| * | W3110S.gb | 3,585,035 | 0 | T | C | 61.1% | 23.6 / 38.7 | 36 | E100E (GAA→GAG) | yihI | conserved hypothetical protein |
| * | W3110S.gb | 1,489,608 | 1 | . | G | 59.5% | 75.2 / 53.8 | 37 | coding (660/801 nt) | ydcF | conserved hypothetical protein |
| * | W3110S.gb | 1,489,608 | 2 | . | A | 59.5% | 68.1 / 55.4 | 37 | coding (660/801 nt) | ydcF | conserved hypothetical protein |
| * | W3110S.gb | 1,489,608 | 3 | . | T | 59.5% | 62.8 / 56.5 | 37 | coding (660/801 nt) | ydcF | conserved hypothetical protein |
| * | W3110S.gb | 4,069,539 | 1 | . | G | 59.1% | 42.1 / 29.0 | 22 | coding (442/1974 nt) | glgX | glycogen debranching enzyme |
| * | W3110S.gb | 4,586,895 | 1 | . | G | 58.8% | 32.6 / 22.2 | 17 | coding (836/1590 nt) | hsdM | DNA methylase M |
| * | W3110S.gb | 1,749,544 | 1 | . | A | 58.3% | 12.6 / 15.3 | 12 | coding (700/1605 nt) | ydhS | conserved hypothetical protein with FAD/NAD(P)‑binding domain |
| * | W3110S.gb | 2,432,943 | 1 | . | T | 57.7% | 43.9 / 40.4 | 26 | coding (295/783 nt) | argT | lysine/arginine/ornithine transporter subunit |
| * | W3110S.gb | 2,101,391 | 0 | G | . | 57.6% | ‑5.4 / 68.1 | 33 | coding (360/1167 nt) | ugd | UDP‑glucose 6‑dehydrogenase |