mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 23.6% | 74.9 / 28.6 | 55 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 74 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1552011 = | 37 (0.960) | 4 (0.110) | 4/264 | 5.0 | 10.5% | intergenic (+20/+387) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| ? | NC_000913_3_hsa_tpiA | 1552043 = | NA (NA) | intergenic (+52/+355) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913_3_hsa_tpiA | 78821 = | 47 (1.210) | 4 (0.110) | 4/270 | 5.1 | 7.6% | intergenic (+22/+27) | setA/leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| ? | NC_000913_3_hsa_tpiA | 78841 = | 53 (1.460) | intergenic (+42/+7) | setA/leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1552011 = | 37 (0.960) | 4 (0.110) | 4/272 | 5.2 | 10.3% | intergenic (+20/+387) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| ? | NC_000913_3_hsa_tpiA | 1552221 = | NA (NA) | intergenic (+230/+177) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2373111 = | 41 (1.060) | 4 (0.110) | 4/278 | 5.3 | 8.8% | coding (220/387 nt) | arnF | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit |
| ? | NC_000913_3_hsa_tpiA | 2373131 = | 43 (1.150) | coding (240/387 nt) | arnF | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2153318 = | 42 (1.090) | 4 (0.110) | 4/280 | 5.3 | 8.5% | noncoding (10/143 nt) | sibA | sRNA antisense regulator of toxic IbsA protein |
| ? | NC_000913_3_hsa_tpiA | 2153342 = | 45 (1.200) | noncoding (34/143 nt) | sibA | sRNA antisense regulator of toxic IbsA protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1929001 = | 43 (1.110) | 3 (0.080) | 3/266 | 5.6 | 6.8% | intergenic (‑162/+47) | ptrB/yebE | protease II/DUF533 family inner membrane protein |
| ? | NC_000913_3_hsa_tpiA | 1929040 = | 43 (1.200) | intergenic (‑201/+8) | ptrB/yebE | protease II/DUF533 family inner membrane protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4150387 = | 32 (0.830) | 3 (0.080) | 3/270 | 5.7 | 9.7% | intergenic (‑140/+42) | eptC/ppc | LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase |
| ? | NC_000913_3_hsa_tpiA | 4150415 = | 26 (0.720) | intergenic (‑168/+14) | eptC/ppc | LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3091097 | 41 (1.060) | 3 (0.080) | 3/270 | 5.7 | 7.6% | intergenic (+43/‑37) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent |
| ? | NC_000913_3_hsa_tpiA | = 3091103 | 35 (0.960) | intergenic (+49/‑31) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4372595 | 43 (1.110) | 3 (0.080) | 3/278 | 5.8 | 6.6% | coding (1589/1647 nt) | groL | Cpn60 chaperonin GroEL, large subunit of GroESL |
| ? | NC_000913_3_hsa_tpiA | = 4372605 | 44 (1.180) | coding (1599/1647 nt) | groL | Cpn60 chaperonin GroEL, large subunit of GroESL | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4094533 | 58 (1.500) | 4 (0.110) | 3/274 | 5.8 | 6.8% | noncoding (218/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 4094687 | NA (NA) | noncoding (372/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||