mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 255,668 | 1 | .→A | 1.8% | 4.2 ‑0.5 ‑0.0 | 162 | coding (49/1458 nt) | pepD | aminoacyl‑histidine dipeptidase (peptidase D) |
| * | NC_000913 | 3,267,360 | 0 | C→A | 100.0% | 3.1 | 1 | intergenic (‑295/‑20) | tdcA/tdcR | tdc operon transcriptional activator/L‑threonine dehydratase operon activator protein |
| * | NC_000913 | 2,774,909 | 0 | C→A | 100.0% | 2.5 | 1 | S531Y (TCT→TAT) | yfjW | CP4‑57 prophage; putative inner membrane protein |
| * | NC_000913 | 814,908 | 4 | .→A | 1.3% | 2.0 0.0 ‑0.7 | 157 | coding (1383/2022 nt) | uvrB | exision nuclease of nucleotide excision repair, DNA damage recognition component |
| * | NC_000913 | 3,732,479 | 1 | .→A | 1.3% | 2.0 0.0 ‑0.8 | 156 | coding (279/1542 nt) | xylG | D‑xylose ABC transporter dual domain ATPase |
| * | NC_000913 | 2,774,851 | 0 | A→C | 100.0% | 1.9 | 3 | K512Q (AAG→CAG) | yfjW | CP4‑57 prophage; putative inner membrane protein |
| * | NC_000913 | 3,152,160 | 1 | .→C | 1.3% | 1.9 0.0 ‑0.5 | 157 | intergenic (‑176/‑76) | exbB/metC | membrane spanning protein in TonB‑ExbB‑ExbD complex/cystathionine beta‑lyase, PLP‑dependent |
| * | NC_000913 | 3,446,746 | 2 | .→A | 1.3% | 1.9 0.0 ‑0.4 | 152 | coding (139/306 nt) | rpsN | 30S ribosomal subunit protein S14 |
| * | NC_000913 | 4,187,673 | 1 | .→C | 1.3% | 1.9 0.0 ‑0.9 | 150 | coding (2324/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| * | NC_000913 | 1,093,400 | 1 | .→A | 1.2% | 1.8 0.0 ‑0.8 | 170 | coding (525/1359 nt) | ycdT | diguanylate cyclase, membrane‑anchored |
| * | NC_000913 | 3,446,746 | 1 | .→G | 1.3% | 1.8 0.0 ‑0.8 | 152 | coding (139/306 nt) | rpsN | 30S ribosomal subunit protein S14 |
| * | NC_000913 | 1,651,699 | 1 | .→G | 1.4% | 1.7 0.0 ‑0.5 | 146 | pseudogene (149/1158 nt) | intQ | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
| * | NC_000913 | 814,908 | 3 | .→T | 1.3% | 1.6 0.0 ‑0.3 | 157 | coding (1383/2022 nt) | uvrB | exision nuclease of nucleotide excision repair, DNA damage recognition component |
| * | NC_000913 | 814,908 | 5 | .→C | 1.3% | 1.6 0.0 ‑0.2 | 157 | coding (1383/2022 nt) | uvrB | exision nuclease of nucleotide excision repair, DNA damage recognition component |
| * | NC_000913 | 1,833,093 | 1 | .→A | 1.3% | 1.6 0.0 ‑0.5 | 154 | coding (666/807 nt) | xthA | exonuclease III |
| * | NC_000913 | 2,381,317 | 1 | .→C | 1.3% | 1.6 0.0 ‑0.4 | 153 | coding (227/462 nt) | elaA | GNAT family putative N‑acetyltransferase |
| * | NC_000913 | 4,181,486 | 1 | .→C | 1.3% | 1.5 0.0 ‑0.6 | 156 | coding (242/4029 nt) | rpoB | RNA polymerase, beta subunit |
| * | NC_000913 | 2,997,418 | 0 | G→C | 100.0% | 1.4 | 3 | V61V (GTC→GTG) | insC1 | IS2 repressor TnpA |
| * | NC_000913 | 15,660 | 0 | A→T | 100.0% | 1.3 | 3 | L72F (TTA→TTT) | insL1 | IS186 transposase |
| * | NC_000913 | 2,387,993 | 1 | .→C | 1.1% | 1.3 0.0 ‑0.1 | 176 | coding (434/717 nt) | yfbN | uncharacterized protein |
| * | NC_000913 | 16,440 | 0 | T→C | 100.0% | 1.2 | 1 | P332P (CCT→CCC) | insL1 | IS186 transposase |
| * | NC_000913 | 228,387 | 0 | T→C | 100.0% | 1.2 | 1 | noncoding (2629/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 2,514,564 | 0 | G→T | 100.0% | 1.2 | 1 | L78L (CTG→CTT) | insL1 | IS186 transposase |
| * | NC_000913 | 1,651,699 | 2 | .→A | 1.4% | 1.1 0.0 ‑0.1 | 146 | pseudogene (149/1158 nt) | intQ | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
| * | NC_000913 | 2,774,898 | 0 | A→G | 100.0% | 1.1 | 1 | E527E (GAA→GAG) | yfjW | CP4‑57 prophage; putative inner membrane protein |
| * | NC_000913 | 228,382 | 0 | G→T | 100.0% | 1.0 | 1 | noncoding (2624/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 2,774,906 | 0 | G→T | 100.0% | 0.9 | 1 | G530V (GGT→GTT) | yfjW | CP4‑57 prophage; putative inner membrane protein |
| * | NC_000913 | 1,529,008 | 0 | C→G | 100.0% | 0.8 | 1 | pseudogene (1107/2037 nt) | rhsE | pseudogene, Rhs family |
| * | NC_000913 | 2,730,664 | 0 | C→A | 100.0% | 0.8 | 1 | noncoding (494/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| * | NC_000913 | 2,997,407 | 0 | T→G | 100.0% | 0.8 | 1 | E65A (GAA→GCA) | insC1 | IS2 repressor TnpA |
| * | NC_000913 | 3,424,251 | 0 | A→C | 100.0% | 0.8 | 3 | noncoding (2533/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,095,220 | 0 | A→G | 100.0% | 0.7 | 3 | L73P (CTC→CCC) | insE1 | IS3 transposase A |
| * | NC_000913 | 1,528,996 | 0 | T→C | 100.0% | 0.7 | 1 | pseudogene (1095/2037 nt) | rhsE | pseudogene, Rhs family |
| * | NC_000913 | 1,528,998 | 0 | A→C | 100.0% | 0.7 | 1 | pseudogene (1097/2037 nt) | rhsE | pseudogene, Rhs family |
| * | NC_000913 | 1,529,002 | 0 | C→A | 100.0% | 0.7 | 1 | pseudogene (1101/2037 nt) | rhsE | pseudogene, Rhs family |
| * | NC_000913 | 2,102,041 | 0 | A→C | 100.0% | 0.7 | 2 | F291V (TTT→GTT) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,267,380 | 0 | A→C | 100.0% | 0.7 | 1 | M1M (ATG→CTG) † | tdcR | L‑threonine dehydratase operon activator protein |
| * | NC_000913 | 3,542,160 | 1 | .→G | 1.1% | 0.6 0.0 ‑0.2 | 188 | coding (1754/2322 nt) | feoB | ferrous iron transporter protein B and GTP‑binding protein; membrane protein |
| * | NC_000913 | 2,823,590 | 1 | .→C | 1.2% | 0.5 0.0 ‑0.1 | 162 | coding (180/1062 nt) | recA | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| * | NC_000913 | 814,908 | 1 | .→C | 1.3% | 0.1 0.0 ‑0.0 | 157 | coding (1383/2022 nt) | uvrB | exision nuclease of nucleotide excision repair, DNA damage recognition component |
| * | NC_000913 | 3,542,160 | 2 | .→G | 1.1% | 0.1 0.0 ‑0.2 | 188 | coding (1754/2322 nt) | feoB | ferrous iron transporter protein B and GTP‑binding protein; membrane protein |