mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 131 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 689,514 | 0 | A | C | 55.6% | 15.8 / 23.6 | 18 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| * | NC_000913 | 1,356,201 | 0 | T | G | 53.6% | 26.0 / 37.0 | 29 | T304P (ACC→CCC) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| * | NC_000913 | 354,288 | 0 | T | G | 51.4% | 42.4 / 56.4 | 35 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 1,969,794 | 0 | A | C | 50.0% | 33.8 / 12.4 | 34 | G397G (GGT→GGG) | tap | methyl‑accepting protein IV |
| * | NC_000913 | 2,810,756 | 0 | G | T | 48.4% | 34.0 / 164.6 | 95 | intergenic (+77/‑14) | ygaH/mprA | putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| * | NC_000913 | 1,861,866 | 0 | G | T | 48.1% | 34.6 / 14.8 | 27 | Q37K (CAA→AAA) | yeaC | DUF1315 family protein |
| * | NC_000913 | 1,245,234 | 0 | G | T | 46.3% | 38.1 / 21.8 | 41 | L25F (TTG→TTT) | ycgY | uncharacterized protein |
| * | NC_000913 | 357,890 | 0 | C | A | 45.8% | 9.6 / 10.4 | 24 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,604,237 | 0 | C | T | 44.2% | 43.2 / 18.5 | 43 | S64L (TCG→TTG) | lsrD | autoinducer 2 import system permease protein |
| * | NC_000913 | 1,369,508 | 0 | C | G | 43.6% | 63.5 / 10.1 | 39 | A39G (GCG→GGG) | pspD | peripheral inner membrane phage‑shock protein |
| * | NC_000913 | 1,222,233 | 0 | G | A | 41.9% | 31.9 / 18.0 | 32 | pseudogene (60/75 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| * | NC_000913 | 3,206,435 | 0 | C | T | 40.7% | 63.2 / 26.9 | 54 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 2,984,441 | 0 | A | C | 40.0% | 136.2 / 14.9 | 77 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 3,220,759 | 0 | C | A | 38.9% | 55.1 / 17.3 | 36 | A422A (GCC→GCA) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| * | NC_000913 | 657,894 | 0 | T | C | 38.5% | 55.7 / 13.1 | 39 | G15G (GGA→GGG) | flc | fluoride efflux channel, dual topology membrane protein |
| * | NC_000913 | 3,220,767 | 0 | T | C | 38.5% | 50.1 / 13.8 | 39 | I425T (ATC→ACC) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| * | NC_000913 | 1,015,516 | 0 | G | T | 37.9% | 79.1 / 21.0 | 58 | intergenic (+57/‑199) | pqiC/rmf | DUF330 family putative lipoprotein/ribosome modulation factor |
| * | NC_000913 | 29,486 | 0 | C | A | 37.8% | 80.6 / 21.9 | 45 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 2,434,882 | 0 | T | G | 37.6% | 165.6 / 13.7 | 86 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 1,222,596 | 0 | G | A | 37.5% | 45.9 / 21.9 | 40 | F13F (TTC→TTT) | ymgD | uncharacterized protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 35 (0.690) | 4 (0.090) | 4/266 | 7.3 | 11.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 32 (0.700) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||