mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 403 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,326,450 | 0 | T | G | 52.6% | 66.3 / 90.1 | 57 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 2,781,645 | 0 | A | C | 50.0% | 51.2 / 13.1 | 48 | V361G (GTT→GGT) | ypjA | adhesin‑like autotransporter |
| * | NC_000913 | 2,151,589 | 0 | A | T | 46.3% | 65.6 / 31.3 | 54 | L135F (TTA→TTT) | yegJ | uncharacterized protein |
| * | NC_000913 | 354,288 | 0 | T | G | 45.3% | 73.1 / 17.8 | 55 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 2,252,646 | 0 | T | G | 44.7% | 55.7 / 13.5 | 47 | V316G (GTA→GGA) | yeiI | putative kinase |
| * | NC_000913 | 3,001,164 | 0 | A | C | 44.4% | 68.0 / 11.5 | 45 | T274P (ACC→CCC) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |
| * | NC_000913 | 869,107 | 0 | A | G | 44.2% | 79.5 / 11.9 | 52 | I530V (ATT→GTT) | gsiA | glutathione ABC transporter ATPase |
| * | NC_000913 | 2,151,581 | 0 | G | T | 44.2% | 74.8 / 28.6 | 53 | D133Y (GAT→TAT) | yegJ | uncharacterized protein |
| * | NC_000913 | 2,096,090 | 0 | A | G | 43.6% | 71.9 / 15.3 | 56 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase, catalytic subunit with HisH |
| * | NC_000913 | 1,222,596 | 0 | G | A | 43.6% | 34.4 / 27.2 | 39 | F13F (TTC→TTT) | ymgD | uncharacterized protein |
| * | NC_000913 | 364,526 | 0 | C | A | 43.1% | 84.2 / 20.9 | 51 | G594C (GGC→TGC) | lacZ | beta‑D‑galactosidase |
| * | NC_000913 | 2,578,143 | 0 | A | C | 42.9% | 90.2 / 28.6 | 63 | L79V (TTA→GTA) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| * | NC_000913 | 501,564 | 0 | A | C | 42.6% | 108.6 / 19.0 | 68 | *559E (TAA→GAA) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 1,622,816 | 0 | G | A | 42.5% | 21.3 / 40.9 | 40 | intergenic (+75/+144) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 4,042,993 | 0 | C | T | 42.3% | 60.7 / 19.5 | 52 | F193F (TTC→TTT) | srkA | Cpx stress response Thr/Ser protein kinase; MazF antagonist protein |
| * | NC_000913 | 1,222,233 | 0 | G | A | 42.2% | 40.6 / 25.9 | 45 | pseudogene (60/75 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| * | NC_000913 | 1,574,051 | 0 | G | T | 42.2% | 62.2 / 16.5 | 45 | V384V (GTC→GTA) | pqqL | putative periplasmic M16 family zinc metalloendopeptidase |
| * | NC_000913 | 1,574,079 | 0 | C | A | 42.2% | 75.4 / 20.9 | 45 | G375V (GGT→GTT) | pqqL | putative periplasmic M16 family zinc metalloendopeptidase |
| * | NC_000913 | 300,721 | 0 | G | T | 42.1% | 61.3 / 16.7 | 38 | Q72K (CAA→AAA) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 599,576 | 0 | T | G | 42.0% | 80.4 / 17.7 | 50 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |