mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 454 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 54.0% | 23.4 / 82.5 | 50 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,001,918 | 0 | A | C | 46.6% | 91.0 / 17.6 | 58 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 2,984,441 | 0 | A | C | 44.3% | 86.9 / 27.0 | 61 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 2,903,692 | 0 | C | A | 43.6% | 140.2 / 79.9 | 101 | intergenic (+318/+1055) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 3,206,435 | 0 | C | T | 43.3% | 63.6 / 53.0 | 67 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 869,107 | 0 | A | G | 43.1% | 81.2 / 15.5 | 59 | I530V (ATT→GTT) | gsiA | glutathione ABC transporter ATPase |
| * | NC_000913 | 2,151,686 | 0 | G | T | 42.1% | 43.4 / 18.4 | 57 | intergenic (+40/+25) | yegJ/yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| * | NC_000913 | 1,413,735 | 0 | A | T | 42.0% | 56.5 / 37.4 | 50 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 941,713 | 0 | T | G | 41.9% | 98.6 / 17.8 | 62 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 3,508,657 | 0 | A | G | 41.7% | 86.0 / 20.1 | 60 | F386S (TTC→TCC) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 29,496 | 0 | T | A | 41.5% | 80.8 / 34.6 | 65 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 501,575 | 0 | A | C | 41.4% | 126.7 / 19.8 | 70 | V555G (GTG→GGG) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 436,516 | 0 | C | A | 40.7% | 88.3 / 29.8 | 60 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 5,159 | 0 | G | A | 40.5% | 85.8 / 47.0 | 74 | intergenic (+139/‑75) | thrC/yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
| * | NC_000913 | 4,258,974 | 0 | T | G | 40.5% | 146.4 / 17.2 | 75 | G411G (GGT→GGG) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| * | NC_000913 | 1,222,233 | 0 | G | A | 40.3% | 85.6 / 36.6 | 72 | pseudogene (60/75 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| * | NC_000913 | 29,486 | 0 | C | A | 40.0% | 120.5 / 39.4 | 65 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 1,222,596 | 0 | G | A | 40.0% | 85.5 / 43.5 | 71 | F13F (TTC→TTT) | ymgD | uncharacterized protein |
| * | NC_000913 | 4,604,344 | 0 | C | T | 39.6% | 58.4 / 18.3 | 48 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 3,423,287 | 0 | G | C | 39.4% | 115.7 / 26.6 | 66 | intergenic (+93/+136) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |