mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 550 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 15,410 | 0 | T | G | 51.9% | 53.9 / 83.8 | 53 | intergenic (+112/‑35) | dnaJ/insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| * | NC_000913 | 354,288 | 0 | T | G | 48.5% | 98.8 / 16.4 | 68 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 3,556,207 | 0 | T | C | 47.8% | 74.2 / 26.5 | 67 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 4,381,728 | 0 | A | C | 46.7% | 77.8 / 14.2 | 60 | G197G (GGT→GGG) | frdA | anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
| * | NC_000913 | 354,282 | 0 | T | G | 46.2% | 99.8 / 11.6 | 65 | V526G (GTT→GGT) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 925,900 | 0 | A | G | 45.6% | 105.7 / 17.4 | 69 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 718,659 | 0 | T | A | 44.6% | 106.1 / 36.3 | 74 | D601V (GAT→GTT) | speF | ornithine decarboxylase isozyme, inducible |
| * | NC_000913 | 3,556,200 | 0 | G | A | 43.9% | 74.5 / 33.0 | 66 | S217F (TCC→TTC) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 4,332,791 | 0 | A | C | 43.9% | 100.8 / 13.6 | 57 | V161G (GTG→GGG) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| * | NC_000913 | 3,665,702 | 0 | C | A | 43.6% | 147.6 / 56.4 | 101 | A37S (GCG→TCG) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| * | NC_000913 | 15,391 | 0 | A | C | 43.5% | 78.5 / 28.4 | 62 | intergenic (+93/‑54) | dnaJ/insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| * | NC_000913 | 1,153,573 | 0 | T | G | 43.5% | 99.1 / 24.4 | 62 | Y92D (TAC→GAC) | pabC | 4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| * | NC_000913 | 4,465,787 | 0 | G | A | 43.2% | 94.2 / 35.8 | 74 | R132C (CGC→TGC) | treB | trehalose‑specific PTS enzyme: IIB and IIC component |
| * | NC_000913 | 357,890 | 0 | C | A | 43.2% | 47.3 / 25.1 | 44 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,604,237 | 0 | C | T | 42.5% | 49.7 / 20.8 | 47 | S64L (TCG→TTG) | lsrD | autoinducer 2 import system permease protein |
| * | NC_000913 | 436,516 | 0 | C | A | 41.5% | 90.2 / 18.1 | 53 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 1,701,310 | 0 | A | C | 41.4% | 111.4 / 11.2 | 71 | T118T (ACA→ACC) | malY | PLP‑dependent beta‑cystathionase and maltose regulon regulator |
| * | NC_000913 | 15,395 | 0 | G | A | 41.4% | 66.1 / 26.2 | 59 | intergenic (+97/‑50) | dnaJ/insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| * | NC_000913 | 2,349,145 | 0 | A | C | 41.3% | 109.6 / 14.0 | 63 | F110V (TTC→GTC) | inaA | acid‑inducible Kdo/WaaP family putative kinase |
| * | NC_000913 | 2,578,143 | 0 | A | C | 41.0% | 135.1 / 28.5 | 78 | L79V (TTA→GTA) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1411899 = | 86 (1.140) | 4 (0.060) | 4/246 | 12.1 | 6.3% | coding (50/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913 | = 1434958 | 47 (0.750) | pseudogene (51/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related | |||||