mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 813 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 599,576 | 0 | T | G | 47.1% | 102.1 / 23.8 | 68 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 2,001,911 | 0 | G | A | 46.2% | 94.8 / 60.7 | 91 | intergenic (‑122/+199) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 925,900 | 0 | A | G | 45.9% | 128.6 / 33.2 | 88 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 753,125 | 0 | T | A | 45.6% | 126.4 / 50.0 | 92 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| * | NC_000913 | 357,890 | 0 | C | A | 45.0% | 68.5 / 37.8 | 60 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,601,176 | 0 | T | C | 44.3% | 82.5 / 42.1 | 71 | E304G (GAA→GGA) | ftsX | putative ABC transporter permease |
| * | NC_000913 | 1,574,051 | 0 | G | T | 44.0% | 161.2 / 38.9 | 85 | V384V (GTC→GTA) | pqqL | putative periplasmic M16 family zinc metalloendopeptidase |
| * | NC_000913 | 213,341 | 0 | A | G | 43.5% | 137.5 / 29.2 | 92 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 1,604,237 | 0 | C | T | 43.5% | 85.1 / 31.2 | 70 | S64L (TCG→TTG) | lsrD | autoinducer 2 import system permease protein |
| * | NC_000913 | 1,413,735 | 0 | A | T | 43.3% | 130.2 / 61.2 | 90 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 501,575 | 0 | A | C | 43.2% | 166.3 / 32.9 | 95 | V555G (GTG→GGG) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 3,364,396 | 0 | A | T | 43.0% | 126.5 / 40.8 | 86 | P530P (CCA→CCT) | yhcD | putative outer membrane fimbrial subunit usher protein |
| * | NC_000913 | 3,206,435 | 0 | C | T | 43.0% | 102.0 / 66.9 | 93 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 2,001,918 | 0 | A | C | 42.7% | 169.4 / 12.4 | 89 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 2,147,733 | 0 | T | G | 42.5% | 142.9 / 10.6 | 80 | G20G (GGT→GGG) | yegD | Hsp70 chaperone family protein |
| * | NC_000913 | 366,526 | 0 | T | G | 42.1% | 140.1 / 22.1 | 76 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 1,825,061 | 0 | G | A | 41.9% | 128.7 / 55.5 | 93 | intergenic (‑124/+79) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 2,921,177 | 0 | A | C | 41.8% | 93.6 / 12.3 | 55 | G308G (GGT→GGG) | gudP | putative D‑glucarate transporter |
| * | NC_000913 | 1,356,201 | 0 | T | G | 41.3% | 144.6 / 11.9 | 76 | T304P (ACC→CCC) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| * | NC_000913 | 2,481,804 | 0 | G | A | 40.8% | 109.2 / 31.1 | 71 | P125S (CCA→TCA) | emrY | putative multidrug efflux system |