mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 569 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,984,441 | 0 | A | C | 53.7% | 46.9 / 87.7 | 54 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 2,001,911 | 0 | G | A | 51.7% | 33.4 / 82.2 | 58 | intergenic (‑122/+199) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 2,001,918 | 0 | A | C | 50.9% | 68.2 / 94.5 | 58 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 941,713 | 0 | T | G | 50.0% | 71.2 / 25.5 | 58 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 2,040,075 | 0 | C | G | 49.1% | 46.0 / 30.0 | 57 | L200V (CTG→GTG) | yedY | membrane‑anchored, periplasmic TMAO, DMSO reductase |
| * | NC_000913 | 29,496 | 0 | T | A | 48.6% | 81.2 / 45.9 | 73 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 2,421,443 | 0 | A | C | 48.2% | 88.9 / 12.6 | 57 | Y40S (TAC→TCC) | folX | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| * | NC_000913 | 2,386,862 | 0 | G | A | 46.9% | 50.9 / 53.1 | 64 | intergenic (+31/‑72) | yfbL/yfbM | putative M28A family peptidase/DUF1877 family protein |
| * | NC_000913 | 4,381,728 | 0 | A | C | 46.7% | 99.9 / 21.2 | 75 | G197G (GGT→GGG) | frdA | anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
| * | NC_000913 | 5,159 | 0 | G | A | 46.0% | 72.4 / 45.9 | 74 | intergenic (+139/‑75) | thrC/yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
| * | NC_000913 | 3,813,272 | 0 | C | T | 45.5% | 41.0 / 25.6 | 55 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding |
| * | NC_000913 | 3,443,277 | 0 | A | C | 45.3% | 122.2 / 22.6 | 75 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 3,350,844 | 0 | A | C | 45.1% | 76.8 / 12.7 | 51 | L728V (TTA→GTA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 907,602 | 0 | A | C | 44.6% | 77.3 / 22.0 | 56 | G227G (GGT→GGG) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 1,574,051 | 0 | G | T | 44.6% | 91.1 / 33.4 | 65 | V384V (GTC→GTA) | pqqL | putative periplasmic M16 family zinc metalloendopeptidase |
| * | NC_000913 | 599,576 | 0 | T | G | 44.1% | 101.2 / 32.9 | 69 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 436,516 | 0 | C | A | 44.1% | 67.2 / 31.2 | 59 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 29,486 | 0 | C | A | 43.8% | 104.5 / 49.3 | 73 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 898,598 | 0 | T | A | 43.3% | 94.9 / 34.7 | 67 | A27A (GCT→GCA) | rlmC | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent |
| * | NC_000913 | 1,222,596 | 0 | G | A | 42.5% | 45.7 / 30.1 | 47 | F13F (TTC→TTT) | ymgD | uncharacterized protein |