mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 21.7% | 112.2 / 23.0 | 69 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 163 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 3895222 = | 37 (0.880) | 6 (0.160) | 6/258 | 4.4 | 13.8% | intergenic (+4/+50) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter |
| ? | NC_000913_3_hsa_tpiA | 3895257 = | 41 (1.070) | intergenic (+39/+15) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter | |||||
| * | ? | NC_000913_3_hsa_tpiA | 15310 = | 50 (1.190) | 3 (0.110) +49 bp |
3/184 | 4.4 | 8.7% | intergenic (+12/‑135) | dnaJ/insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| ? | NC_000913_3_hsa_tpiA | 2514263 = | 47 (1.120) | intergenic (+19/‑68) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2729630 = | NA (NA) | 6 (0.150) | 6/272 | 4.6 | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2729652 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4040683 | 91 (2.160) | 17 (0.410) | 6/278 | 4.7 | 21.2% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_hsa_tpiA | = 4213144 | 37 (0.890) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1097172 = | NA (NA) | 6 (0.150) | 6/276 | 4.7 | 14.9% | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097188 = | 35 (0.830) | intergenic (+359/+377) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1096988 = | 48 (1.140) | 6 (0.150) | 6/276 | 4.7 | 11.3% | intergenic (+159/+577) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097191 = | NA (NA) | intergenic (+362/+374) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1028361 = | NA (NA) | 6 (0.160) | 5/254 | 4.8 | NA | intergenic (+2/+43) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein |
| ? | NC_000913_3_hsa_tpiA | 1028395 = | NA (NA) | intergenic (+36/+9) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 114505 | 28 (0.670) | 5 (0.130) | 5/258 | 4.8 | 16.8% | intergenic (+18/+17) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| ? | NC_000913_3_hsa_tpiA | = 114511 | 24 (0.620) | intergenic (+24/+11) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3856874 = | 43 (1.020) | 5 (0.130) | 5/260 | 4.9 | 11.4% | intergenic (+10/+37) | yidI/yidJ | inner membrane protein/sulfatase/phosphatase superfamily protein |
| ? | NC_000913_3_hsa_tpiA | 3856909 = | 38 (0.980) | intergenic (+45/+2) | yidI/yidJ | inner membrane protein/sulfatase/phosphatase superfamily protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3110454 = | 33 (0.780) | 5 (0.130) | 5/266 | 5.0 | 13.3% | intergenic (+13/+136) | pheV/yghD | tRNA‑Phe/putative membrane‑anchored secretion pathway M‑type protein |
| ? | NC_000913_3_hsa_tpiA | 3110475 = | 34 (0.860) | intergenic (+34/+115) | pheV/yghD | tRNA‑Phe/putative membrane‑anchored secretion pathway M‑type protein | |||||