mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 27.4% | 89.1 / 35.9 | 63 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 135 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 4317833 = | NA (NA) | 6 (0.160) | 6/264 | 4.4 | NA | noncoding (1/83 nt) | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_pae_tpiA | 4317865 = | NA (NA) | noncoding (33/83 nt) | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 4082549 = | 52 (1.300) | 5 (0.130) | 5/260 | 4.7 | 8.8% | coding (211/903 nt) | fdoH | formate dehydrogenase‑O, Fe‑S subunit |
| ? | NC_000913_3_pae_tpiA | 4082575 = | 55 (1.470) | coding (185/903 nt) | fdoH | formate dehydrogenase‑O, Fe‑S subunit | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3741088 | NA (NA) | 5 (0.130) | 5/258 | 4.7 | NA | intergenic (+130/+21) | avtA/ysaA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| ? | NC_000913_3_pae_tpiA | = 3741092 | NA (NA) | intergenic (+134/+17) | avtA/ysaA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component | |||||
| * | ? | NC_000913_3_pae_tpiA | 684498 = | 43 (1.080) | 5 (0.130) | 5/260 | 4.7 | 10.6% | intergenic (‑86/+32) | rihA/gltL | ribonucleoside hydrolase 1/glutamate/aspartate ABC transporter ATPase |
| ? | NC_000913_3_pae_tpiA | 684524 = | 44 (1.180) | intergenic (‑112/+6) | rihA/gltL | ribonucleoside hydrolase 1/glutamate/aspartate ABC transporter ATPase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2133431 | NA (NA) | 7 (0.180) | 5/264 | 4.8 | NA | intergenic (‑34/+59) | wcaA/wzc | putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| ? | NC_000913_3_pae_tpiA | = 2133461 | NA (NA) | noncoding (30/34 nt) | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 707905 = | 52 (1.300) | 7 (0.180) | 5/264 | 4.8 | 12.4% | noncoding (136/165 nt) | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_tpiA | = 2133431 | NA (NA) | intergenic (‑34/+59) | wcaA/wzc | putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase | |||||
| * | ? | NC_000913_3_pae_tpiA | 3423376 = | 44 (1.100) | 5 (0.130) | 5/274 | 4.9 | 10.3% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | 3423665 = | NA (NA) | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1062575 | NA (NA) | 5 (0.130) | 5/268 | 4.9 | 14.7% | coding (281/306 nt) | cbpM | modulator of CbpA co‑chaperone |
| ? | NC_000913_3_pae_tpiA | = 1062596 | 29 (0.750) | coding (260/306 nt) | cbpM | modulator of CbpA co‑chaperone | |||||
| * | ? | NC_000913_3_pae_tpiA | 1570598 = | 53 (1.330) | 4 (0.110) +CCGTTACCGTTAAAC |
4/248 | 5.0 | 10.0% | intergenic (‑109/+47) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913_3_pae_tpiA | 3666176 = | 28 (0.700) | intergenic (‑366/+4) | gadX/gadA | acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent | |||||
| * | ? | NC_000913_3_pae_tpiA | 1584163 = | 27 (0.680) | 4 (0.110) | 4/254 | 5.1 | 14.1% | intergenic (‑204/+44) | safA/ydeP | two‑component system connector membrane protein, EvgSA to PhoQP/putative oxidoreductase |
| ? | NC_000913_3_pae_tpiA | 1584194 = | 24 (0.660) | intergenic (‑235/+13) | safA/ydeP | two‑component system connector membrane protein, EvgSA to PhoQP/putative oxidoreductase | |||||