Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F999 I0 R1
|
92 |
59.4 |
4455785 |
96.3% |
4290920 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,485,906 |
C→A |
A16S (GCC→TCC) |
pepA ← |
aminopeptidase A/I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,485,906 | 0 | C | A | 100.0%
| 237.6
/ NA
| 57 | A16S (GCC→TCC) | pepA | aminopeptidase A/I |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (30/27); total (30/27) |
AATCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGCACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATG > NC_000913/4485859‑4485952
|
aaTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAAc > 1:3001946/1‑50 (MQ=255)
aaTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAAc > 1:3026507/1‑50 (MQ=255)
aaTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAAc < 1:3428733/50‑1 (MQ=255)
aTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACt < 1:3898552/50‑1 (MQ=255)
tCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTc < 1:1346433/50‑1 (MQ=255)
agaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCt < 1:3978644/50‑1 (MQ=255)
agaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCt < 1:3079833/50‑1 (MQ=255)
agaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCt > 1:3617507/1‑50 (MQ=255)
aaaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGt > 1:2824687/1‑50 (MQ=255)
aaaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGt > 1:375697/1‑50 (MQ=255)
aGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGttt > 1:1771326/1‑50 (MQ=255)
aGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGttt < 1:2603771/50‑1 (MQ=255)
aGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGttt > 1:1118856/1‑50 (MQ=255)
aGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGttt > 1:2026583/1‑50 (MQ=255)
gCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtct > 1:3949325/1‑50 (MQ=255)
cGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtctc > 1:1812930/1‑50 (MQ=255)
gACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTcc > 1:3924016/1‑50 (MQ=255)
gACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTcc > 1:2476195/1‑50 (MQ=255)
cGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCgg < 1:2562637/50‑1 (MQ=255)
cGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCgg < 1:2164217/50‑1 (MQ=255)
cGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCgg > 1:2384175/1‑50 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg > 1:1489132/1‑50 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg < 1:1785369/50‑1 (MQ=255)
ggTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGc > 1:4410255/1‑49 (MQ=255)
gTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCt < 1:427111/49‑1 (MQ=255)
ttCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAc < 1:287272/50‑1 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAcc < 1:3978696/49‑1 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAcc < 1:4269129/49‑1 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAcc < 1:1355503/49‑1 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAcc < 1:1810910/49‑1 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg < 1:394063/49‑1 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg < 1:1638944/49‑1 (MQ=255)
aaGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCt > 1:1598454/1‑50 (MQ=255)
aGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtt > 1:666993/1‑50 (MQ=255)
aGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtt > 1:1915384/1‑50 (MQ=255)
aGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtt > 1:2935132/1‑50 (MQ=255)
gACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttt < 1:3078230/50‑1 (MQ=255)
cGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttttt < 1:2819379/50‑1 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa > 1:1380201/1‑50 (MQ=255)
ccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTaca < 1:506856/50‑1 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:2896997/1‑49 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt < 1:1936688/50‑1 (MQ=255)
cgacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt > 1:66320/1‑49 (MQ=255)
acgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaaa > 1:2789860/1‑50 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc > 1:1789656/1‑50 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc > 1:1267656/1‑50 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc < 1:3747258/50‑1 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc > 1:3356894/1‑50 (MQ=255)
gaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACt < 1:95062/50‑1 (MQ=255)
aTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTc < 1:2487919/50‑1 (MQ=255)
aTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTc < 1:843116/50‑1 (MQ=255)
tGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTc > 1:2745167/1‑49 (MQ=255)
tGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTc > 1:1473845/1‑49 (MQ=255)
tGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTc > 1:1047079/1‑49 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg > 1:4237612/1‑50 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg < 1:2465498/50‑1 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg < 1:1103746/50‑1 (MQ=255)
|
AATCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGCACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATG > NC_000913/4485859‑4485952
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
