Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F999 I0 R1
|
97 |
117.0 |
8624996 |
98.0% |
8452496 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,485,906 |
C→A |
A16S (GCC→TCC) |
pepA ← |
aminopeptidase A/I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,485,906 | 0 | C | A | 100.0%
| 495.1
/ NA
| 124 | A16S (GCC→TCC) | pepA | aminopeptidase A/I |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (71/53); total (71/53) |
Only 100 of 124 total aligned reads displayed.
AATCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGCACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATG > NC_000913/4485859‑4485952
|
aaTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAAc < 1:5921923/50‑1 (MQ=255)
aaTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAAc > 1:3597863/1‑50 (MQ=255)
aTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACt > 1:1172524/1‑50 (MQ=255)
aTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACt < 1:6806258/50‑1 (MQ=255)
aTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACt > 1:1843563/1‑50 (MQ=255)
tCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTc < 1:3405581/50‑1 (MQ=255)
tCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTc > 1:4082858/1‑50 (MQ=255)
cGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTcc > 1:6573454/1‑50 (MQ=255)
cGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTcc > 1:892289/1‑50 (MQ=255)
cGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTcc > 1:179929/1‑50 (MQ=255)
ggAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCg > 1:5056667/1‑50 (MQ=255)
ggAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCg > 1:792922/1‑50 (MQ=255)
ggAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCg < 1:4286704/50‑1 (MQ=255)
gagaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGc > 1:7260327/1‑50 (MQ=255)
gagaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGc < 1:3232707/50‑1 (MQ=255)
agaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCt > 1:1495973/1‑50 (MQ=255)
agaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCt > 1:5264899/1‑50 (MQ=255)
agaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCt > 1:8519162/1‑50 (MQ=255)
gaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTg < 1:2421794/50‑1 (MQ=255)
gaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTg > 1:6128117/1‑50 (MQ=255)
aGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGttt > 1:3099728/1‑50 (MQ=255)
ggCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtc < 1:7804361/50‑1 (MQ=255)
ggCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtc < 1:33543/50‑1 (MQ=255)
gCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtct < 1:7861144/50‑1 (MQ=255)
gCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtct < 1:7654597/50‑1 (MQ=255)
cGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtctc > 1:1392259/1‑50 (MQ=255)
gACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTcc < 1:6354922/50‑1 (MQ=255)
gACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTcc < 1:6630829/50‑1 (MQ=255)
gACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTcc < 1:4302665/50‑1 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg < 1:1007255/50‑1 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg < 1:6494068/50‑1 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg < 1:6466444/50‑1 (MQ=255)
cGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCgg > 1:5618233/1‑50 (MQ=255)
cGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCgg < 1:803708/50‑1 (MQ=255)
cGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCgg > 1:4449008/1‑50 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg > 1:1347447/1‑50 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg > 1:4996990/1‑50 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg > 1:781660/1‑50 (MQ=255)
tGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGc > 1:8353793/1‑50 (MQ=255)
tGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGc < 1:8284372/50‑1 (MQ=255)
gTTTGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCCCCGGGCTa > 1:1382135/1‑50 (MQ=255)
gTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCt < 1:3200/49‑1 (MQ=255)
gTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCt < 1:4133649/49‑1 (MQ=255)
gTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTa > 1:6428747/1‑50 (MQ=255)
gTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTa > 1:7256995/1‑50 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAcc < 1:3094770/49‑1 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg < 1:3993640/49‑1 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:8153759/1‑50 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:5729627/1‑50 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:112081/1‑50 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:4720776/1‑50 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:3418039/1‑50 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:2164844/1‑50 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:1928301/1‑50 (MQ=255)
aaGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCt < 1:5719369/50‑1 (MQ=255)
aaGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCt > 1:8203065/1‑50 (MQ=255)
aGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtt > 1:6062910/1‑50 (MQ=255)
gACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttt < 1:7367570/50‑1 (MQ=255)
gACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttt < 1:7403260/50‑1 (MQ=255)
gACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttt < 1:3916339/50‑1 (MQ=255)
aCGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtttt < 1:115414/50‑1 (MQ=255)
aCGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtttt > 1:1801602/1‑50 (MQ=255)
cGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttttt < 1:3558331/50‑1 (MQ=255)
cGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttttt < 1:7730095/50‑1 (MQ=255)
cGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtttt > 1:8096099/1‑49 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa > 1:7981359/1‑50 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa > 1:6044604/1‑50 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa < 1:5969920/50‑1 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa < 1:668996/50‑1 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa > 1:4652433/1‑50 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa < 1:2840731/50‑1 (MQ=255)
cccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa > 1:6121166/1‑49 (MQ=255)
ccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTaca < 1:7491876/50‑1 (MQ=255)
ccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTaca < 1:8398898/50‑1 (MQ=255)
ccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTaca > 1:6946235/1‑50 (MQ=255)
ccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTaca > 1:3223736/1‑50 (MQ=255)
cACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:5513214/1‑50 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:6909658/1‑49 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:666592/1‑49 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:7271578/1‑49 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt < 1:925254/50‑1 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt < 1:5017397/50‑1 (MQ=255)
cgacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt > 1:6780753/1‑49 (MQ=255)
cgacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt > 1:3575854/1‑49 (MQ=255)
cgacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa < 1:1380619/50‑1 (MQ=255)
cgacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa < 1:218498/50‑1 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa > 1:3921797/1‑49 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa > 1:6083428/1‑49 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa > 1:1491074/1‑49 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa > 1:2558339/1‑49 (MQ=255)
acgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaaa < 1:4481731/50‑1 (MQ=255)
acgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaaa > 1:3453007/1‑50 (MQ=255)
acgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaaa < 1:7314631/50‑1 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc > 1:1247446/1‑50 (MQ=255)
gaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACt > 1:1472101/1‑50 (MQ=255)
gaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACt > 1:7607298/1‑50 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCAt < 1:6626839/50‑1 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCAt < 1:4507683/50‑1 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg < 1:4400058/50‑1 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg < 1:1474387/50‑1 (MQ=255)
|
AATCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGCACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATG > NC_000913/4485859‑4485952
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
