Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F999 I0 R1
|
76 |
68.2 |
5140122 |
96.8% |
4975638 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,485,906 |
C→A |
A16S (GCC→TCC) |
pepA ← |
aminopeptidase A/I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,485,906 | 0 | C | A | 100.0%
| 281.2
/ NA
| 72 | A16S (GCC→TCC) | pepA | aminopeptidase A/I |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (33/39); total (33/39) |
AATCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGCACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATG > NC_000913/4485859‑4485952
|
aaTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAAc > 1:4601741/1‑50 (MQ=255)
aaTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAAc > 1:412246/1‑50 (MQ=255)
aTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACt < 1:2094694/50‑1 (MQ=255)
aTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACt > 1:84450/1‑50 (MQ=255)
tCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTc < 1:1151327/50‑1 (MQ=255)
tCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTc > 1:4691992/1‑50 (MQ=255)
ggAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTcc < 1:1188401/49‑1 (MQ=255)
ggAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCg < 1:525552/50‑1 (MQ=255)
ggAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCg > 1:1875428/1‑50 (MQ=255)
agaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCt > 1:4777776/1‑50 (MQ=255)
agaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCt > 1:1537254/1‑50 (MQ=255)
agaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCt < 1:3618138/50‑1 (MQ=255)
gaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTg < 1:1248656/50‑1 (MQ=255)
gaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTg > 1:4327958/1‑50 (MQ=255)
aaaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGt > 1:97988/1‑50 (MQ=255)
aaaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGt < 1:3040287/50‑1 (MQ=255)
aaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGtt > 1:3277064/1‑50 (MQ=255)
aGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGttt < 1:3878394/50‑1 (MQ=255)
ggCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtc < 1:3039180/50‑1 (MQ=255)
gCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtct > 1:3930935/1‑50 (MQ=255)
gCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtct < 1:2084152/50‑1 (MQ=255)
gACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTcc > 1:4252605/1‑50 (MQ=255)
gACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTcc > 1:1230761/1‑50 (MQ=255)
gACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTcc > 1:1159698/1‑50 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg < 1:3255102/50‑1 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg > 1:1099518/1‑50 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg < 1:2495532/50‑1 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg < 1:1400770/50‑1 (MQ=255)
cGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCgg > 1:1817461/1‑50 (MQ=255)
cGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCgg < 1:1752853/50‑1 (MQ=255)
cGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCgg > 1:3247945/1‑50 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg < 1:4489727/50‑1 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg < 1:3190028/50‑1 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg < 1:1418857/50‑1 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg > 1:2054253/1‑50 (MQ=255)
tGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGc < 1:3513924/50‑1 (MQ=255)
gTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCt < 1:2797510/49‑1 (MQ=255)
ttCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAc < 1:4489417/50‑1 (MQ=255)
ttCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAc > 1:3070606/1‑50 (MQ=255)
ttCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAc > 1:3573084/1‑50 (MQ=255)
ttCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAc < 1:4669051/50‑1 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAcc < 1:1965468/49‑1 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg > 1:31483/1‑50 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg > 1:419930/1‑50 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg < 1:1517282/49‑1 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:1019740/1‑50 (MQ=255)
aaGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCt < 1:1225573/50‑1 (MQ=255)
aaGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCt < 1:2202957/50‑1 (MQ=255)
cGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttttt < 1:2536223/50‑1 (MQ=255)
cGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttttt < 1:2457413/50‑1 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa < 1:2104879/50‑1 (MQ=255)
cccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTac < 1:343231/50‑1 (MQ=255)
cccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa > 1:4359234/1‑49 (MQ=255)
ccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTaca < 1:1705088/50‑1 (MQ=255)
ccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTaca > 1:4558744/1‑50 (MQ=255)
cACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:5096621/1‑50 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt < 1:1560548/50‑1 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt < 1:4712852/50‑1 (MQ=255)
cgacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt > 1:3269127/1‑49 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaa < 1:3821941/50‑1 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaa < 1:4643661/50‑1 (MQ=255)
acgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaaa > 1:5103389/1‑50 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc > 1:4382234/1‑50 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc < 1:5036545/50‑1 (MQ=255)
gaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACt > 1:3960292/1‑50 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCa < 1:1770841/49‑1 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCa < 1:874137/49‑1 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCAt > 1:1418207/1‑50 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCAt > 1:3580936/1‑50 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCAt > 1:2524733/1‑50 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg < 1:2575373/50‑1 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg < 1:1206299/50‑1 (MQ=255)
|
AATCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGCACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATG > NC_000913/4485859‑4485952
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
