Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F999 I0 R1
|
75 |
109.1 |
8321009 |
96.7% |
8046415 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,485,906 |
C→A |
A16S (GCC→TCC) |
pepA ← |
aminopeptidase A/I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,485,906 | 0 | C | A | 100.0%
| 409.7
/ NA
| 106 | A16S (GCC→TCC) | pepA | aminopeptidase A/I |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (68/38); total (68/38) |
Only 100 of 106 total aligned reads displayed.
AATCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGCACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATG > NC_000913/4485859‑4485952
|
aaTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAAc < 1:7049452/50‑1 (MQ=255)
aaTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAAc > 1:2656815/1‑50 (MQ=255)
cGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTcc > 1:8244029/1‑50 (MQ=255)
ggAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTcc < 1:5569550/49‑1 (MQ=255)
ggAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCg > 1:7764875/1‑50 (MQ=255)
gagaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGc < 1:7026085/50‑1 (MQ=255)
gagaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGc > 1:4666664/1‑50 (MQ=255)
agaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCt < 1:5634341/50‑1 (MQ=255)
gaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTg > 1:4683215/1‑50 (MQ=255)
gaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTg > 1:1427474/1‑50 (MQ=255)
aaaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGt < 1:3718926/50‑1 (MQ=255)
aaaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGt > 1:3951107/1‑50 (MQ=255)
aaaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGt > 1:7608771/1‑50 (MQ=255)
aaaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGt > 1:8195015/1‑50 (MQ=255)
aaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGtt < 1:2689929/50‑1 (MQ=255)
aaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGtt < 1:164248/50‑1 (MQ=255)
aaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGtt > 1:3168242/1‑50 (MQ=255)
aGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGttt > 1:500067/1‑50 (MQ=255)
ggCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtc > 1:4842409/1‑50 (MQ=255)
ggCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtc < 1:7669314/50‑1 (MQ=255)
gCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtct > 1:6062778/1‑50 (MQ=255)
cGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtctc > 1:684714/1‑50 (MQ=255)
cGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtctc > 1:279844/1‑50 (MQ=255)
cGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtctc > 1:187809/1‑50 (MQ=255)
gACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTcc > 1:7917049/1‑50 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg > 1:4617809/1‑50 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg < 1:2347683/50‑1 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg < 1:1364300/50‑1 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg < 1:882526/50‑1 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg > 1:4510779/1‑50 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg > 1:693280/1‑50 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg > 1:1145191/1‑50 (MQ=255)
gTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCggg > 1:941604/1‑50 (MQ=255)
ggTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGc > 1:1308004/1‑49 (MQ=255)
gTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTa > 1:3709955/1‑50 (MQ=255)
gTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTa > 1:7902477/1‑50 (MQ=255)
ttCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAc > 1:3669082/1‑50 (MQ=255)
ttCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAc < 1:3508975/50‑1 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAcc < 1:1970768/49‑1 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAcc < 1:3263501/49‑1 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg > 1:319397/1‑50 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg > 1:791752/1‑50 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg > 1:689441/1‑50 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg > 1:2432458/1‑50 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc < 1:5291157/50‑1 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:2084173/1‑50 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:2502994/1‑50 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc < 1:4425943/50‑1 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:7461822/1‑50 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:7396187/1‑50 (MQ=255)
aaGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCt < 1:3933081/50‑1 (MQ=255)
aGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtt > 1:933129/1‑50 (MQ=255)
aGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtt > 1:5219230/1‑50 (MQ=255)
gACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttt > 1:8075258/1‑50 (MQ=255)
gACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttt > 1:1774799/1‑50 (MQ=255)
aCGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtttt < 1:5152590/50‑1 (MQ=255)
cGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttttt < 1:5714656/50‑1 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa > 1:3597381/1‑50 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa < 1:1943751/50‑1 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa > 1:3397336/1‑50 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa < 1:3362756/50‑1 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa > 1:6883569/1‑50 (MQ=255)
cccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa > 1:1206575/1‑49 (MQ=255)
ccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTaca < 1:5276186/50‑1 (MQ=255)
cACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:4147214/1‑50 (MQ=255)
cACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:6874399/1‑50 (MQ=255)
cACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac < 1:3086302/50‑1 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:5268766/1‑49 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:5210932/1‑49 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt < 1:7399581/50‑1 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt < 1:2732068/50‑1 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt < 1:2234272/50‑1 (MQ=255)
cgacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt > 1:3203623/1‑49 (MQ=255)
cgacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt > 1:2383851/1‑49 (MQ=255)
cgacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa < 1:6240549/50‑1 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaa < 1:5103975/50‑1 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa > 1:8022463/1‑49 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa > 1:5929933/1‑49 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa > 1:3464430/1‑49 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa > 1:7217876/1‑49 (MQ=255)
acgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaaa < 1:1378440/50‑1 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc < 1:7768131/50‑1 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc < 1:5393750/50‑1 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc > 1:362282/1‑50 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc < 1:5591389/50‑1 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc > 1:5830432/1‑50 (MQ=255)
cgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAAc > 1:6265130/1‑50 (MQ=255)
gaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACt < 1:7657141/50‑1 (MQ=255)
gaTGCAGGAACTCCGCTGTTTCTCAGGGCTACCGCTTTTTACACTAAACt > 1:7197679/1‑50 (MQ=255)
aTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTc > 1:5391209/1‑50 (MQ=255)
tGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTcc < 1:7613069/50‑1 (MQ=255)
gCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCa > 1:6816222/1‑50 (MQ=255)
gCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCa > 1:6927602/1‑50 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCAt > 1:2886867/1‑50 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCAt > 1:3978515/1‑50 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg > 1:4891318/1‑50 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg > 1:5873773/1‑50 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg < 1:382216/50‑1 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg > 1:5444029/1‑50 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg > 1:5438392/1‑50 (MQ=255)
|
AATCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGCACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATG > NC_000913/4485859‑4485952
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
