Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F999 I0 R1
|
73 |
75.1 |
5586924 |
96.8% |
5408142 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,485,906 |
C→A |
A16S (GCC→TCC) |
pepA ← |
aminopeptidase A/I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,485,906 | 0 | C | A | 100.0%
| 340.6
/ NA
| 83 | A16S (GCC→TCC) | pepA | aminopeptidase A/I |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (47/36); total (47/36) |
AATCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGCACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATG > NC_000913/4485859‑4485952
|
aaTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAAc > 1:2172794/1‑50 (MQ=255)
aaTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAAc > 1:3137428/1‑50 (MQ=255)
aTCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACt > 1:4671801/1‑50 (MQ=255)
tCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTc > 1:1176015/1‑50 (MQ=255)
cGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTcc > 1:319387/1‑50 (MQ=255)
cGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTcc > 1:465011/1‑50 (MQ=255)
ggAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTcc < 1:1074076/49‑1 (MQ=255)
ggAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTcc < 1:4069496/49‑1 (MQ=255)
ggAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTcc < 1:5339370/49‑1 (MQ=255)
ggAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTcc < 1:4722706/49‑1 (MQ=255)
gagaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGc < 1:1067050/50‑1 (MQ=255)
agaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCt < 1:5586113/50‑1 (MQ=255)
agaAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCt > 1:2415946/1‑50 (MQ=255)
aaaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGt > 1:3374737/1‑50 (MQ=255)
aaaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGt > 1:333960/1‑50 (MQ=255)
aaaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGt > 1:2221056/1‑50 (MQ=255)
aaGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGtt < 1:5419037/50‑1 (MQ=255)
aGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGttt > 1:5458064/1‑50 (MQ=255)
ggCGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtc > 1:2288677/1‑50 (MQ=255)
cGACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTtctc < 1:4825962/50‑1 (MQ=255)
gACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTcc > 1:4539108/1‑50 (MQ=255)
gACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTcc < 1:3748951/50‑1 (MQ=255)
gACGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTcc > 1:3616015/1‑50 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg > 1:3797406/1‑50 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg < 1:5503907/50‑1 (MQ=255)
aCGTGGTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCg > 1:1938122/1‑50 (MQ=255)
gTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCt < 1:17991/49‑1 (MQ=255)
gTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCt < 1:2949728/49‑1 (MQ=255)
gTTCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCt < 1:4833665/49‑1 (MQ=255)
ttCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAc < 1:1485361/50‑1 (MQ=255)
ttCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAc > 1:4880957/1‑50 (MQ=255)
tCGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTAcc > 1:4112460/1‑50 (MQ=255)
cGAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg > 1:4822845/1‑50 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg < 1:4928309/49‑1 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCg < 1:2321244/49‑1 (MQ=255)
gAAGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGc > 1:3381736/1‑50 (MQ=255)
aaGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCt > 1:2994091/1‑50 (MQ=255)
aaGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCt > 1:5443430/1‑50 (MQ=255)
aGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtt > 1:3472619/1‑50 (MQ=255)
aGACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtt < 1:4240220/50‑1 (MQ=255)
gACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttt > 1:1606860/1‑50 (MQ=255)
gACGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttt > 1:4283997/1‑50 (MQ=255)
aCGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtttt < 1:4556519/50‑1 (MQ=255)
aCGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCtttt > 1:1109623/1‑50 (MQ=255)
cGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttttt < 1:813209/50‑1 (MQ=255)
cGCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCttttt < 1:769081/50‑1 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa > 1:1066393/1‑50 (MQ=255)
gCCCACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTa > 1:2916796/1‑50 (MQ=255)
ccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTaca > 1:4239803/1‑50 (MQ=255)
ccACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTaca < 1:1876445/50‑1 (MQ=255)
cACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:5316576/1‑50 (MQ=255)
cACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:4825588/1‑50 (MQ=255)
cACGACGATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:5425078/1‑50 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:5200631/1‑49 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:2447283/1‑49 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTacac > 1:1403799/1‑49 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt < 1:4757526/50‑1 (MQ=255)
acgacgATGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACt < 1:2009094/50‑1 (MQ=255)
cgacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa < 1:1861747/50‑1 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaa < 1:3403738/50‑1 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa > 1:5385906/1‑49 (MQ=255)
gacgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTa > 1:4256859/1‑49 (MQ=255)
acgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaaa > 1:1155049/1‑50 (MQ=255)
acgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaaa > 1:2750931/1‑50 (MQ=255)
acgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaaa < 1:2483645/50‑1 (MQ=255)
acgaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTaaa < 1:4282973/50‑1 (MQ=255)
gaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACt > 1:551365/1‑50 (MQ=255)
gaTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACt < 1:1316099/50‑1 (MQ=255)
aTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTc < 1:2171981/50‑1 (MQ=255)
aTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTc < 1:2932229/50‑1 (MQ=255)
aTGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTc > 1:2136541/1‑50 (MQ=255)
tGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTcc < 1:3620289/50‑1 (MQ=255)
tGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTc > 1:3242951/1‑49 (MQ=255)
tGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTc > 1:1504257/1‑49 (MQ=255)
tGCAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTc > 1:3789466/1‑49 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCa < 1:4601445/49‑1 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCa < 1:3415985/49‑1 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCAt < 1:1478329/50‑1 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCAt > 1:4658450/1‑50 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCAt > 1:673337/1‑50 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCAt > 1:758653/1‑50 (MQ=255)
cAGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCAt < 1:3883989/50‑1 (MQ=255)
aGGAACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATg < 1:2165610/50‑1 (MQ=255)
|
AATCGGAGAAAGGCGACGTGGTTCGAAGACGCCCACGACGATGCAGGCACTCCGCTGTTTCTCCGGGCTACCGCTTTTTACACTAAACTCCATG > NC_000913/4485859‑4485952
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
