Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F133 I0 R1
|
200 |
171.4 |
8351354 |
94.3% |
7875326 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,665,195:1 |
(T)7→8 |
100% |
intergenic (+75/‑120) |
dmsD → / → clcB |
twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,665,188 | 1 | . | T | 96.5%
| 282.4
/ 2.8
| 86 | intergenic (+68/‑127) | dmsD/clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
| Reads supporting (aligned to +/- strand): ref base . (3/0); new base T (45/38); total (48/38) |
| Fisher's exact test for biased strand distribution p-value = 2.51e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 106 total aligned reads displayed.
TTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATG > NC_000913/1665089‑1665281
|
ttCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACg > 2:1640294/1‑100 (MQ=255)
ccTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATAGTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑t < 2:2981599/100‑1 (MQ=255)
tGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑ttt > 1:1436848/1‑100 (MQ=255)
gTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt > 1:647786/1‑100 (MQ=255)
tCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑t < 1:1818905/100‑1 (MQ=255)
cgcgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑tt < 1:3780900/100‑1 (MQ=255)
cgcgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑tt < 2:2197828/100‑1 (MQ=255)
gcgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑ttt < 2:3163881/100‑2 (MQ=255)
gcgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑ttt < 1:2156622/100‑2 (MQ=255)
cgGTTAAACCTCTGTTTCGATAGTATCTCCTTAATATTGCTGGATGGTGACTATTTCGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑t < 2:2847550/97‑1 (MQ=255)
cgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCACTCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑ttta < 2:2232766/100‑3 (MQ=255)
cgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑ttta > 1:4072289/1‑98 (MQ=255)
cgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑ttt < 2:111324/99‑2 (MQ=255)
ggTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑tttat > 1:2418946/1‑97 (MQ=255)
ggTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑tttat > 2:631598/1‑97 (MQ=255)
gTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑tttatc < 1:908597/100‑5 (MQ=255)
ttAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑tttatct < 1:3296467/100‑6 (MQ=255)
tgaaCCGCGGTTGCGATAGGATCACCGTAATATTGCAGGATGGTGGCGATTACGCGCAATCCGACAATAATAGGTTACAGTGTCACG‑‑t‑tttt‑ttta < 2:2416198/94‑3 (MQ=255)
aaaCCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATctct > 1:2192332/1‑100 (MQ=255)
aaaCCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATctct > 1:576153/1‑100 (MQ=255)
aaCCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCtt > 1:843338/1‑100 (MQ=255)
aCCGCTGTTTCGATAGGATCACCGTAATATTGACGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTa > 2:3979293/1‑100 (MQ=255)
cGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTAGGCGCATTCCGGAAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTaaa < 2:1137422/100‑1 (MQ=255)
cTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAgc < 1:3389051/100‑1 (MQ=255)
tGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGAGTCACG‑‑TATTTT‑TTATCTCTTAAAgta > 2:2405381/1‑98 (MQ=255)
ttCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAgcacgc > 2:3216258/1‑100 (MQ=255)
tCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTTTCTCTTAAAgc > 2:3372023/1‑95 (MQ=255)
cGATAGGATCACCGTAATTTTGCCGGATGTTGACGATTACTCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAgcacgcac < 1:3597128/100‑1 (MQ=255)
cGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAgcacgcac < 2:1976929/100‑1 (MQ=255)
cGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑T‑TTTT‑TTATCTCTTAAAGCACGCACt > 2:3800176/1‑100 (MQ=255)
gATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAgcacgcac < 2:3476900/99‑1 (MQ=255)
gATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACt > 1:421438/1‑100 (MQ=255)
ggATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCtt > 2:1731558/1‑100 (MQ=255)
ggATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCtt > 2:2693030/1‑100 (MQ=255)
ggATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCtt > 1:4129188/1‑100 (MQ=255)
aTCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCtttt < 2:3784114/100‑1 (MQ=255)
tCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTg < 1:2912863/100‑1 (MQ=255)
cACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCtgtggc < 2:3287143/100‑6 (MQ=255)
aCCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCg > 2:2815507/1‑100 (MQ=255)
ccGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCgg < 1:2302489/100‑1 (MQ=255)
ccGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCgg > 1:2474607/1‑100 (MQ=255)
ccGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCg < 2:388009/99‑1 (MQ=255)
cGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCgg < 1:3492732/100‑1 (MQ=255)
gTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCt > 1:377278/1‑100 (MQ=255)
gTAATATTGCCGGAGGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGc < 2:4041797/99‑1 (MQ=255)
gTAAGATTGCCGGATGGTGACGATTACGTGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGc < 2:3697821/99‑1 (MQ=255)
tAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTg < 1:3982713/100‑1 (MQ=255)
tatTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGcc < 1:984488/100‑1 (MQ=255)
atTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCct > 1:3543182/1‑100 (MQ=255)
atTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCct > 1:979731/1‑100 (MQ=255)
ttGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCctc < 1:1283124/100‑1 (MQ=255)
tGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCctct > 1:2697948/1‑100 (MQ=255)
gCCGGATGGTGACGATTATGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCtt > 1:2274065/1‑100 (MQ=255)
gCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATTTTTTAAAGTACACACTGCTTTTGCGGCTg > 2:1340214/1‑93 (MQ=255)
gCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCtt > 1:1399954/1‑100 (MQ=255)
gCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑T‑TTTTGTTATCTCTTAAAGCAAGCACTGCTTTTGCGGATGGCCTCtt > 1:102028/1‑100 (MQ=255)
cGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCtttt > 2:3585667/1‑100 (MQ=255)
cGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCtttt > 1:3319313/1‑100 (MQ=255)
ggATGGTGACGATTATGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTg < 1:4110684/100‑1 (MQ=255)
gATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGc > 2:4167818/1‑100 (MQ=255)
gATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGc < 2:2091885/100‑1 (MQ=255)
aTGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGcc < 1:3352200/100‑1 (MQ=255)
gTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCa > 1:646229/1‑100 (MQ=255)
tGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTTTTTTTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCaa > 2:1623775/1‑100 (MQ=255)
aCGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCaaaa < 1:3449054/100‑1 (MQ=255)
cGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAAt > 1:928523/1‑100 (MQ=255)
cGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAAt < 1:2613952/100‑1 (MQ=255)
cGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAAt > 1:1306382/1‑100 (MQ=255)
gATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAAt < 2:2958680/99‑1 (MQ=255)
aCGCGCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATTTCTTAATTCACGCACTGCTTTTGCGGCTGGCCCCTTTTGCCGCAACATCGTc > 1:623479/1‑99 (MQ=255)
cgcgCAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGc < 2:866492/100‑1 (MQ=255)
gcgcAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGcc > 2:374407/1‑100 (MQ=255)
cgcAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCcccc > 2:3346254/1‑100 (MQ=255)
gcAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCg < 2:3467885/100‑1 (MQ=255)
cAATCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGCCTGGCTTCTTTTGCCGCAAACTAGTCGccc > 2:4039305/1‑98 (MQ=255)
tCCGGCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGtt > 1:3585095/1‑100 (MQ=255)
ccGGCAATAATAGGTTACAGTGTCACGTTT‑TTTT‑TTTTTTTTTAAAGCACGCACTGCTTTTGCGGCTTTCCTCTTTTGCCGCAAAATAGTCGCCCGTGtt > 2:2630655/1‑100 (MQ=255)
ggCAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCa < 2:844097/100‑1 (MQ=255)
cAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCAtt < 2:699683/100‑1 (MQ=255)
cAATAATAGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCAtt > 1:2713628/1‑100 (MQ=255)
ataataGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGc < 2:2896487/100‑1 (MQ=255)
taataGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGcc < 1:548183/100‑1 (MQ=255)
aataGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGccc < 1:3150305/100‑1 (MQ=255)
ataGGTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGcc < 2:2754179/98‑1 (MQ=255)
ggTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCCTTGCCCAttt > 2:2306923/1‑100 (MQ=255)
ggTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCAttt > 2:4137417/1‑100 (MQ=255)
gTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTc < 1:3129367/100‑1 (MQ=255)
gTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTc > 1:3633257/1‑100 (MQ=255)
gTTACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTc > 1:601611/1‑100 (MQ=255)
tACAGTGTCACGT‑T‑TTTT‑TTTTTTTTTTAAGCACGCACTGCTTTTACGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTg > 2:1853264/1‑100 (MQ=255)
tACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTg > 2:1992338/1‑100 (MQ=255)
tACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTg < 1:1731568/100‑1 (MQ=255)
tACAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTg < 1:218660/100‑1 (MQ=255)
aCAGTGTCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGc < 1:2451544/100‑1 (MQ=255)
gtgtCGCGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTc < 1:1823928/99‑1 (MQ=255)
gtgtCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCt < 1:3446905/98‑1 (MQ=255)
gtgtCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCa > 1:2388273/1‑100 (MQ=255)
gtCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATg < 1:925374/100‑1 (MQ=255)
tCACGT‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATg < 2:1620435/99‑1 (MQ=255)
tCACGT‑T‑TTTT‑TTATCTCTTAAAGCACCCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCCAACTAGTCGCCCGTCTTTCCTTGCCCCTTTCtccccctg > 2:3650322/1‑92 (MQ=255)
|
TTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑‑T‑TTTT‑TTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATG > NC_000913/1665089‑1665281
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
