Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F27 I0 R1
|
60 |
79.9 |
2053078 |
82.8% |
1699948 |
215.9 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAG > NC_000913/2173118‑2173608
|
CCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTA > M01186:129:000000000‑A5M8V:1:1105:12884:12020/1‑251 (MQ=60)
ggcatacggtatgggagtccgtatcgggggctcggaaagttgtataagagacaGGTGATCCTCATAATGAGGCCCCCCAAGATTAAGGTGCGGAACAGATTCCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTC < M01186:129:000000000‑A5M8V:1:2110:16200:3645/197‑1 (MQ=60)
GGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGGTAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGAA > M01186:129:000000000‑A5M8V:1:1109:21256:12714/1‑251 (MQ=60)
tcgtgtattttttttcgcaagcaaaagagggcatacgagttaggagtcggttcggggggctggggaattgtttaaagagacaGATGCCCGGCGACCGCCATCGCCACGAAGAAGCCGAGGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCC < M01186:129:000000000‑A5M8V:1:2105:25914:7717/169‑1 (MQ=60)
AACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGCCCA > M01186:129:000000000‑A5M8V:1:2114:26960:17494/1‑251 (MQ=60)
AACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGGGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGCTCAAGCCCA > M01186:129:000000000‑A5M8V:1:2103:24616:22816/1‑251 (MQ=60)
CCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGCTAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGGATGTCCCAGCAGCAACGCCGAACCAGGGCCAAT > M01186:129:000000000‑A5M8V:1:2108:25279:22379/1‑251 (MQ=60)
AAGTTTGCGTCGCGACCCCAAGGGTGATGCTAATAAGGAGGACACCCGAGATTAAGGTGGGGAACAGATTCCCCCGATGCAGGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCCCCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGG < M01186:129:000000000‑A5M8V:1:2102:21921:18858/251‑1 (MQ=60)
cagggatcacaAGGGTTATGCCCATAATGATGCCCCCCGAGATTAAGGTGCGGAACAGATTTCCACGAGGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG < M01186:129:000000000‑A5M8V:1:1105:9955:10674/239‑1 (MQ=60)
TCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTAAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCACCGAATGTCCCAGCCGCAACGCCGGATCAAGGCCACTCAGGAACTCCTGACAGCCG > M01186:129:000000000‑A5M8V:1:1113:17634:17993/1‑251 (MQ=60)
CCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATTGTGGCAAGATCGCCAAACGGAAGCACCTGATTACCCGGCACACAACCAGCAATTAAAATGGTGCGTGGGATAAAAATCAGGCTTTCCGATACCA‑‑CCGCCGGATGACCCAGCAGCCACGCCGGATCAAGGCCAATAAGGAACTCCTGACCGCCGA > M01186:129:000000000‑A5M8V:1:1103:8395:5803/1‑251 (MQ=60)
CCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGA > M01186:129:000000000‑A5M8V:1:2105:24888:11146/1‑251 (MQ=60)
GGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCCCCGAACTT > M01186:129:000000000‑A5M8V:1:2111:17179:11892/1‑250 (MQ=60)
CACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGC > M01186:129:000000000‑A5M8V:1:1109:11638:7662/1‑250 (MQ=60)
AGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CAGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCTGAACTTCCCCTGTAAACGACTACCGGCCTGCTTA > M01186:129:000000000‑A5M8V:1:1113:18390:24993/1‑251 (MQ=60)
AGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATAAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTTTAAACAACTACGAaccggcttg > M01186:129:000000000‑A5M8V:1:2106:28551:17907/1‑242 (MQ=60)
aagcgggggcggaacagattcccagagtgcacgggaACCGCCATCGCCAGAAAGAGCCCGAGGGTGGCAAGACCGCAAACCGGCAGCACCTAATTCCCCGGCACAAAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAG < M01186:129:000000000‑A5M8V:1:1106:21083:4848/214‑1 (MQ=60)
aagaagtgggcagacgaaaagggagtccgtcgcgggggctgggaattttgtaaaagagacagggGGCAAGATCCCCAAACGGCAGCACCTAATTACCCGGCACAAAAAAAGCAATTAAAATGGTGAGTGGAATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCG < M01186:129:000000000‑A5M8V:1:1108:15841:5580/187‑1 (MQ=60)
aaagggggggacaatgttcccaggatgcagggcgccccccaccccccgGAAGAAGCCGATGGTGGCAAGATCGCAAAAGGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAACCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGA < M01186:129:000000000‑A5M8V:1:2112:19488:5275/203‑1 (MQ=60)
TAGGGTGCGGAACAGGTTGCCAGGATGCCGGGCGCCCGCCAGCGCCAGGAAAAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTCCCCGGCACACAAACAGCAATAAAAATGGTGAGTGGAATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGA < M01186:129:000000000‑A5M8V:1:1109:10562:14615/251‑1 (MQ=60)
GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTGTGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCatctttcgcgatggcggtta > M01186:129:000000000‑A5M8V:1:1112:18593:21447/1‑231 (MQ=60)
aagtttcccacagggcagggccacggcgatcgccacaaaaagGCCGAGGGTGGAAAGATCGCAAACCGGCAGCCCCTGATTCCCCGACAAAAAAACAGAAATAAAAAGGGGGAGTGGGAAAAAAATCGGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC < M01186:129:000000000‑A5M8V:1:2101:26834:22036/209‑1 (MQ=60)
cagttcccagggtgagtggggacccgCATCGCCACGAAGAAGCCGATGGTGCAAAGACCGCAAACGGGCAGCCCCTTATACCCGGGCACCCAAACAGCAATAAAAATGGGGAGGGGAATAAAAATCAGGCTTGCCGAT‑‑CCCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC < M01186:129:000000000‑A5M8V:1:1107:18033:3610/224‑1 (MQ=60)
GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGACCTCCTGAACGCCGAACTTCGCCTGTAAACGCTTACGAGCCTGCTTAGCGCTAGGCGTTCAACCA > M01186:129:000000000‑A5M8V:1:2103:10424:5800/1‑251 (MQ=60)
GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCA > M01186:129:000000000‑A5M8V:1:1111:25290:6682/1‑251 (MQ=60)
atctcccgaaggcacggcgaccccagtgcccagaaagaggcggtTGGTGGCAAGATCCCAAAAGGGCAGCACCTGATTCCCCGGCACAAAAACAACAATTAAAAGGGTGAGTGGTATAAAAATCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC < M01186:129:000000000‑A5M8V:1:1108:20797:7942/204‑1 (MQ=60)
CCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTCCGAGCCTGCTTAGCGATGGGCGTTAAACCtgtc > M01186:129:000000000‑A5M8V:1:2107:22810:14998/1‑245 (MQ=60)
ccatccccgggcaccgccatgcCCACGAAAAAGCCGATGGTGGCAGGACCGCCAACCGGCAGCACCTGATTACCCGGCACACAAACAGCAATAAAAAGGGGGATGGGAAAAAAAACCAGGCTGGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGAT < M01186:129:000000000‑A5M8V:1:1103:17252:6901/229‑1 (MQ=60)
ATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCAATGGGCGTTAAACCATCCATGATGG > M01186:129:000000000‑A5M8V:1:1109:23590:17680/1‑251 (MQ=60)
cccccaaccgccacaaagaagagcaggggggggcaagctcccaaacgggcagcaacgaattcCCCGGCACAAAAACAGAAATTAAAATGGTGAGTGGGAAAAAAAGCAGGCTTGCGGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATC < M01186:129:000000000‑A5M8V:1:2112:20558:21017/189‑1 (MQ=60)
cacccgccaacgccaagaaaagGCCGAGGGTGGCAAGATCGCCAAACGGCACCACGTGATTCCCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGAAAAAAATCAGGCTTGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATC < M01186:129:000000000‑A5M8V:1:2108:9678:23049/229‑1 (MQ=60)
GCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGCCTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCG > M01186:129:000000000‑A5M8V:1:1109:6885:5768/1‑251 (MQ=60)
tcccaggaaaaagccgaggggggcaaggtcgccaagcggcaccactgaattacccgagaacaaaaaagaaattaaaagggtgaatggaaaaaaaacccggtttgccgatccCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCA < M01186:129:000000000‑A5M8V:1:1110:15141:11363/140‑1 (MQ=60)
cgaaaaacccggtgtggccaacctccccaaccgccagcccctgattccccggaaccaaaatagaAATTAAAATGTTGATTGGAAAAAAAACCAGGCTTGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACCCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGC < M01186:129:000000000‑A5M8V:1:1103:27764:8268/187‑1 (MQ=60)
CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATACCCCGGGGCATTAG > M01186:129:000000000‑A5M8V:1:1105:26561:13781/1‑250 (MQ=60)
TGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCACCCATGATGGGTTTAATCACCCtgtctcttatccacatttccgagcc > M01186:129:000000000‑A5M8V:1:2103:19635:24672/1‑225 (MQ=60)
ccccaaaacggaccccctggataccccgtcaaaaaggccaatgtgaaagggggggtTGGGAAAAAAATCATGCTTGCCGATGC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGATCTCCTGACCGCCGACCTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTGAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTTC < M01186:129:000000000‑A5M8V:1:2113:15645:1526/195‑1 (MQ=60)
ccaaaacggcaccccctgatcccccggcacaaaaacaacaataaaaggggtgagtggaaaaaaatccaggctgcccgatccCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCG < M01186:129:000000000‑A5M8V:1:2102:25503:13625/170‑1 (MQ=60)
ccctgattccccgcccaaaaaacagaattaaaatgggtgagggggaaaaaaacgagccttgccaatcccaCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATAC < M01186:129:000000000‑A5M8V:1:1106:13171:8699/181‑1 (MQ=60)
aaggtgtgggatcccgcttctggggcccgggatggtataaaaggaacaaaatccgggcttgccaatccCCCCGCCGTATGCCCCGGCAACAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATAC < M01186:129:000000000‑A5M8V:1:1111:17804:27521/183‑1 (MQ=60)
GATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCCTCCCTGCCGCCGTTTTTACCGCCAGCTGCAATA‑ACC > M01186:129:000000000‑A5M8V:1:1105:15477:4636/1‑249 (MQ=60)
ctcggagatgtataaagggatagaatgaaaatggggggtggaataaaatcagggctagccgaacccaCCGCCGTATGGCCCAGCAGCAACGCCGGATCAAGGCCAATCAGAAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACAC < M01186:129:000000000‑A5M8V:1:1109:16614:28641/183‑1 (MQ=60)
GCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCG > M01186:129:000000000‑A5M8V:1:1108:12739:20821/1‑251 (MQ=60)
gcaacaaaaacagcaataaaatgggggggcggaaaaaaatccgggtttgcggacacCCCCGCCGTATGCCCCGGCAGCAACGCCGGATCAGGGCCAATCAGGAACTCCTGCCCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACAT < M01186:129:000000000‑A5M8V:1:2101:16385:13694/194‑1 (MQ=60)
ATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAACGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATAACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACGGCCAGCTGCAATACACATTTGAACTCGTAACCCGCGAGG > M01186:129:000000000‑A5M8V:1:1105:19393:28149/1‑249 (MQ=60)
GGGGAGGGGGAAAAAAATCAGGCTTCCCGATCCCA‑‑CCGCCGTATGCCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCAC < M01186:129:000000000‑A5M8V:1:2110:8187:16255/186‑1 (MQ=60)
gaaaaaaaaccgggttgccggatccCCCCGCCGTATGCCCCAGACACAACGCTGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAATTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCC < M01186:129:000000000‑A5M8V:1:2110:13362:4256/225‑1 (MQ=60)
AAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGGCTGTAAACGACTACGAGCCTGCTTCGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCACCATCACTGCCGCCGTTTTTACCACCCGCTGCAATCCACCTTTGCCATCGTAACCCGCGAGGATGCCGATAATCATCCCCATCACA > M01186:129:000000000‑A5M8V:1:2105:6313:18529/1‑251 (MQ=60)
AAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCCCGAGGATGCCGCTAATCAGCCCCATCACA > M01186:129:000000000‑A5M8V:1:2112:12811:15312/1‑251 (MQ=60)
taccaCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAG > M01186:129:000000000‑A5M8V:1:1114:16934:12628/6‑251 (MQ=60)
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CCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAG > NC_000913/2173118‑2173608
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
