Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F9 I0 R1 74 77.5 1840812 85.2% 1568371 224.4

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGT  >  NC_000913/2173122‑2173603
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                
cggtttgcgccccagttgggttgccaaaccatatgttcGCGTCGCGATCCACGGGGTGATGCTCATAATGATGACCCCCGAGATTAAGGTGGGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTC                                                                                                                                                                                                                                       <  M01186:129:000000000‑A5M8V:1:2105:13435:23490/213‑1 (MQ=60)
                     GTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGAAC                                                                                                                                                                                                                    >  M01186:129:000000000‑A5M8V:1:2114:10370:22029/1‑249 (MQ=60)
                        caaaccaatgtttggcgtcgcattaCACAGGGTGATCCTCATAATGATGACCCCCGAGATAAAGGTGCGAAACAGATTTCCA‑GATGGCCCGGCGACCCCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAACCGGCAGCACCTTATTACCCGGTCCACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGC                                                                                                                                                                                                               <  M01186:129:000000000‑A5M8V:1:2110:13263:28219/226‑1 (MQ=60)
                          AACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCC                                                                                                                                                                                                                                     >  M01186:129:000000000‑A5M8V:1:2103:12171:19056/1‑227 (MQ=60)
                             caatgtgtctcgcggcgatccacagggtgatcgccataatgaaggccccgggGATTAAGGTGCGGAACAGATTCCCCAGAT‑GCCCGGCCGCGGCCATCGCCACGAAGAAGCGGATGGGGGCAAGACCGCCAAACGGCAGCACCTGATTACCCGGCACACAAAAAGCAATTAAAATGGTGAGTGGGATAAAAACCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATC                                                                                                                                                                                                          <  M01186:129:000000000‑A5M8V:1:2108:15808:6915/199‑1 (MQ=60)
                                            cgaccccaaggggtatgcctATAATGATGACACCCGGATTTAAGGTGCGGAAAGGATTCCCCCGAG‑GCACGGCGACCCCCATCCCCACGAAGAAGCCGATGGTGGCAAGTGCGCCAAACGGCAGCACCTGATTCCCCGGCACACAAACAGCAATTAAAATGGTGAATGGGATAAAAATCAGGCTTGCGGATAC‑‑CGCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACC                                                                                                                                                                                            <  M01186:129:000000000‑A5M8V:1:2108:17700:22002/230‑1 (MQ=60)
                                              ATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGGTAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGC                                                                                                                                                                                          >  M01186:129:000000000‑A5M8V:1:1105:21560:25088/1‑250 (MQ=60)
                                                CCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGACCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGA                                                                                                                                                                                       >  M01186:129:000000000‑A5M8V:1:1112:13784:18127/1‑251 (MQ=60)
                                                             CTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTACCCGCCGAACTTCGCCTGTAA                                                                                                                                                                          >  M01186:129:000000000‑A5M8V:1:1106:6895:7497/1‑251 (MQ=60)
                                                             CTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCACCAACGCCGGATCAAGGCCAATCAGAAACCCCTGACCGCCGAACTTCGCCTtgaa                                                                                                                                                                          >  M01186:129:000000000‑A5M8V:1:1105:11732:8224/1‑247 (MQ=60)
                                                              cccataatgagagcccccgagattaaggggggaaacggatagccacgaaggcCGGCGACCGCCAGCGCCACAAAGACGCCGATGGTGGCAAGACGGCAAAACGGCAGCACCTGATTCCCCGGCACACAAACAGCAATTAAAATGGTGAGTGGAAAAAAAACCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAA                                                                                                                                                                          <  M01186:129:000000000‑A5M8V:1:1112:8701:23200/199‑1 (MQ=60)
                                                                 TAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGGAAAAGA                                                                                                                                                                      >  M01186:129:000000000‑A5M8V:1:2103:12729:21338/1‑251 (MQ=60)
                                                                  aatgatcccccccgaaattaggggccgaaaaaatttcCCACGAT‑GCCCGGCGACCCCCATACCCACGAAAACGCGGAGGGTGGCAGGATCGCAAAACGGCAGCACCGGATTCCCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAACCAGGCTTCCCAATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGAC                                                                                                                                                                     <  M01186:129:000000000‑A5M8V:1:2107:18144:14938/214‑1 (MQ=60)
                                                                     tctgcagcccggaactgaggttgcgaacatgtctgccacgagggcggcccacgcccgccccccgaaaaagGCCGATGGAGGCAAGATACCCAACCGGCAGCACTTGATTACCCGCCACAAAAACACCAATTAAAATGGTGATGGGTATAAAAAACAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGAC                                                                                                                                                                     <  M01186:129:000000000‑A5M8V:1:1112:16347:25922/179‑1 (MQ=60)
                                                                           cccccgagtatagggtacgaaacaggttcccacgaatcacgtcacCCGCCTTCGCCAGGAAAAAGCCGATGGTGGCAATACCGCAAAACGGCCGCACCTGATTCCCCGGCACACAAACAGGAATTAAAATGGTGAGTGGGATAAAAAGCAGGCTGGCCGAT‑‑CCCGCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAGTCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTGCGAGCC                                                                                                                                                             <  M01186:129:000000000‑A5M8V:1:1101:26279:8175/206‑1 (MQ=60)
                                                                                gaataaagggggGGAACAGTTTCCCACGAT‑GCCCGGCAACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCCCCTGATTCCCCGGCACACAAACAGCAATTAAAATGGGGAGTGGGATAAAAATCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTT                                                                                                                                                        <  M01186:129:000000000‑A5M8V:1:2104:25738:17491/238‑1 (MQ=60)
                                                                                AGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGCACTCCTGACCGCCGAACTTCGCCTGTAAACGCCTACGGGCCTGCTTA                                                                                                                                                       >  M01186:129:000000000‑A5M8V:1:2109:12574:20485/1‑251 (MQ=60)
                                                                                AGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAACCGACTACGAGCCTGCTT                                                                                                                                                        >  M01186:129:000000000‑A5M8V:1:2110:9283:9257/1‑250 (MQ=60)
                                                                                AGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGGAAACGACTACGAGCCGGCTAA                                                                                                                                                       >  M01186:129:000000000‑A5M8V:1:1107:13252:11684/1‑251 (MQ=60)
                                                                                AGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCA                                                                                                                                                                                                         >  M01186:129:000000000‑A5M8V:1:1105:7791:22364/1‑201 (MQ=60)
                                                                                   atgagggtgccgaactggtttcccggatgccgggcgaccggcatcgccaggaagaaggcgaggggggcaaggccacaaaagggaagcactggattcccgggccacaaaccagaAATTAAAAGGGTGAGGGGGAAAAAAAGCAGGCTGGCCGATAC‑‑CGCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGC                                                                                                                                                     <  M01186:129:000000000‑A5M8V:1:2108:11695:16720/138‑1 (MQ=60)
                                                                                     taaggtgggaaaagattttccaggatgcgggcccgcctccatgGCCACGAAGAAGCCGATGGTGGAAAGATCGCCAAACGGCAGCACCTGATTACCCGGAACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTGGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGA                                                                                                                                                   <  M01186:129:000000000‑A5M8V:1:2105:27168:14755/208‑1 (MQ=60)
                                                                                                 ttgtctgtggggctgtgaatgttttataagagccggGAAGAAGCGGATGGTGAAAAGATCGCCAACCGGCAGCCCCTGATACCCCGGCACACAAACAGCAATTAAAAGGGTAGGTGGGATAAAATCCAGGTTTGCC‑‑TATCCCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC                                                                                                                                       <  M01186:129:000000000‑A5M8V:1:1111:5926:13522/215‑1 (MQ=60)
                                                                                                 aagttttcacagtggcagggcgaccgccacgcgcaagaaaaacgcaatgggggaaagacCGCCAAACGGCAGCACCTGATTCCCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC                                                                                                                                       <  M01186:129:000000000‑A5M8V:1:2111:28134:12976/192‑1 (MQ=60)
                                                                                                 aaatttcccccgttgcccggcaccccccatccccaggaaaaacCCGATGGTGGAAAGATCGCCAACCGGCAGCCCCTGATTCCCCGGCACAAAAACAGCAATTAAAATGGTGAGTGGGATAAAAACCAGGCTTCCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC                                                                                                                                       <  M01186:129:000000000‑A5M8V:1:1101:24144:6707/208‑1 (MQ=60)
                                                                                                         cgcgtggcgcggcgaccgcctacggcacgaaggtgccaatggtggcaaaatccccaaacggcgacacccaatgcaCCGGCCCACAAACAGCAATTAAAATGGTGAGTGGGATAAAAAGAAGGCTTGCCGTTCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATG                                                                                                                               <  M01186:129:000000000‑A5M8V:1:2113:17420:3154/176‑1 (MQ=60)
                                                                                                            AT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTC                                                                                                                                                                                                                                       >  M01186:129:000000000‑A5M8V:1:1101:13642:8923/1‑143 (MQ=60)
                                                                                                                                 CCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGGGGCATT                                                                                                       >  M01186:129:000000000‑A5M8V:1:2101:12048:16505/1‑251 (MQ=60)
                                                                                                                                          AACCGAGGGTGACAAGATCGCAAAACGCCAGCTCCTAATCTCCCGTCACACAAACTGCATTTAAAATGGTGAGTTGAATAAAAATCAGGCTTCCCGAT‑‑CCCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCACTCAGGATCTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATC                                                                                              <  M01186:129:000000000‑A5M8V:1:2113:4838:21441/251‑1 (MQ=60)
                                                                                                                                                      CAAGATCGCCAAACGGCAGCACCTGATTACCCGTCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGTTGGGCTTAATTACCCGTGGCATTAGCACCATCACTGCCCCCGTT                                                                                  >  M01186:129:000000000‑A5M8V:1:2109:23260:25434/1‑251 (MQ=60)
                                                                                                                                                              CCAAACGGCAACACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACAAGCCTGCTTAGCGATGGGCGTTAACCCATCCATGATGGGTTTAATAACCCGTGGCATTACCAGCATCACTGCCGCCGATTTTACCC                                                                           >  M01186:129:000000000‑A5M8V:1:1108:19444:4872/1‑250 (MQ=60)
                                                                                                                                                                           CCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCCTTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCcttac                                                              >  M01186:129:000000000‑A5M8V:1:2105:26477:6847/1‑245 (MQ=60)
                                                                                                                                                                            cctgttatccccgccacaaaaaacacaataaaatgtgtggggggaaaaaaaaccggcttggccgatccCCCCGCCGTATTGCCCAACAGCAACGCCGGATCAAGGCCAATCAGGACCTCGTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATAC                                                              <  M01186:129:000000000‑A5M8V:1:1102:24696:6681/183‑1 (MQ=60)
                                                                                                                                                                              GATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCCGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGAATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACAC                                                            >  M01186:129:000000000‑A5M8V:1:1109:27605:9757/1‑249 (MQ=60)
                                                                                                                                                                                       GCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTTACATGG                                                 >  M01186:129:000000000‑A5M8V:1:1104:4791:15512/1‑251 (MQ=60)
                                                                                                                                                                                            aaaaaAGCAATTAAAGGGGTGAGGGGGAAAAAAACCAGGCTTGCGAATAC‑‑CCCCGCCGTAGGCCCCAGCAGCAACGCCGAATCAAGGCCAATTAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCCCCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACC                                            <  M01186:129:000000000‑A5M8V:1:1105:16162:23290/246‑1 (MQ=60)
                                                                                                                                                                                                      TTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCC                                                                                                                                  >  M01186:129:000000000‑A5M8V:1:1109:18805:27739/1‑155 (MQ=60)
                                                                                                                                                                                                             atggtaagtggaaaaaaaaccgggctggcggatcccaCCGCCGTATGTCCCAGCAGCAACCCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGAT                             <  M01186:129:000000000‑A5M8V:1:1105:5915:21958/214‑1 (MQ=60)
                                                                                                                                                                                                             GGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGGTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCCCGAGGATGCCGATAA                           >  M01186:129:000000000‑A5M8V:1:1114:23947:13570/1‑251 (MQ=60)
                                                                                                                                                                                                                      gagaaaaaaactggggtcgccgattcCCCCGCCGTCTGCCCCGGCAGAAACGCCGGATCAAGGCCATTCAGGATCCCAGGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAACCCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCCCGGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCC                     <  M01186:129:000000000‑A5M8V:1:1108:11903:5038/224‑1 (MQ=60)
                                                                                                                                                                                                                      agttgttaaaagagccggcccgatccCCCCGCCGTATGCCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCC                     <  M01186:129:000000000‑A5M8V:1:2114:20380:17192/224‑1 (MQ=60)
                                                                                                                                                                                                                                      GCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAGGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATAACCCTTTGACATCGTAACCCGCacggatgccgcaaacacaccccctcacaaaacccacggg  >  M01186:129:000000000‑A5M8V:1:1114:11487:22153/1‑212 (MQ=60)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                
AGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGAT‑GCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGT  >  NC_000913/2173122‑2173603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑