Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F17 I0 R1 29 52.5 1051376 97.9% 1029297 229.6

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAG  >  NC_000913/2173124‑2173608
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                     
CATAAGCCGCCAGTTGGGTGTTAAAACCAAAAGTTTGCGTCGCGATCCACAGGGTGATGCCCATAATGATGACACCCGAGATTAAGGGGGGGAACGGATTTCCACGATGCCCGGCGCCCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTC                                                                                                                                                                                                                                            <  M01186:133:000000000‑A821B:1:1101:24380:17665/249‑1 (MQ=60)
                 ttgtgcaagccgatagtgtcgGTCGCGAGCCACAGGTTGATGCCCAAAATGAGGACACCCGAGATGAAGGGCCGGAGCAGATTACAACAAGGCACGGCGACCGCCATCGCCACGACGAAGCCGATGGGGGCAAGACCGCTAACCGGCAGCACCTAATTACCCGGCACAGAAACAGCAATTAAAATGGTGAGGGGGATAAAAACCAGGCTAGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGAT                                                                                                                                                                                                                          <  M01186:133:000000000‑A821B:1:1102:21983:16341/229‑1 (MQ=60)
                                             TCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAACCGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAAAGCCGGATCAAGGCCAATCCGGAACTCCTGACCGCCG                                                                                                                                                                                             >  M01186:133:000000000‑A821B:1:2102:17368:8203/1‑251 (MQ=60)
                                                                        CACCCGAGATTAAGGTGCGGACAAGATTTCCACGATGCACGGCGACCGCCATCGCCACAAAGAAGCCGATGGTGGCAAGACCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCC                                                                                                                                                                  <  M01186:133:000000000‑A821B:1:1106:19052:24724/251‑1 (MQ=60)
                                                                        CACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGC                                                                                                                                                                   >  M01186:133:000000000‑A821B:1:1101:17274:8471/1‑250 (MQ=60)
                                                                              ccccgtgggctcggaaatgtgtataagagacggcggctcCCGCCATCGCCACGAAAAAGCGGATGGTGGCAAGATCGCAAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAATTGGTGAGGGGGATAAAAATCAGGTTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTT                                                                                                                                                             <  M01186:133:000000000‑A821B:1:1103:8420:5772/211‑1 (MQ=60)
                                                                              AGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTA                                                                                                                                                            >  M01186:133:000000000‑A821B:1:2108:24576:17126/1‑251 (MQ=60)
                                                                               GATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACCACCAGCAATTAAAATGGTGAGTGGGATAAAACTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGCCCAATCAGGCACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAG                                                                                                                                                           >  M01186:133:000000000‑A821B:1:2103:6308:20602/1‑251 (MQ=60)
                                                                                 TTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCG                                                                                                                                                         <  M01186:133:000000000‑A821B:1:1102:24447:10536/251‑1 (MQ=60)
                                                                                  aaaggggcgaaaaaaattcCCACGATGCCCGGCGACCGCCATCGCCCCGAAGAAGCCGAGGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAAGCAGGCTTCCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGA                                                                                                                                                        <  M01186:133:000000000‑A821B:1:1102:15712:4480/232‑1 (MQ=60)
                                                                                  aaaggcgagaAACAGATCTCCCCGATGCCCGGCGACCGCCATCGCCAGAAAGAAGCCGATGGAGGCAAGAGCGCCAAACGGCAGCACCTGATTACCCGGCACAAAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGA                                                                                                                                                        <  M01186:133:000000000‑A821B:1:2106:11969:19090/241‑1 (MQ=60)
                                                                                  TAGGGTGCGGACAAGATTGCCACGATGCCCGGCGACCGCCATCGCCCATAAGAAGCCGATGGTGACAAGAGTGCGAAAGGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGTATAAAAATCAGGCTTGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGA                                                                                                                                                        <  M01186:133:000000000‑A821B:1:2110:16189:10147/251‑1 (MQ=60)
                                                                                                GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCA                                                                                                                                          >  M01186:133:000000000‑A821B:1:1101:19952:17987/1‑251 (MQ=60)
                                                                                                 attcccacgtggaACGGCGACCGCCCCCGCCACGAAGAAGCCGATGGTGGCAAGACCCCCAAACGGCACCCCCTGATTACCCGCCACCCAACCAGCAATTAAAATGGTGAGTGGGATAAAAACCAGCCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC                                                                                                                                            <  M01186:133:000000000‑A821B:1:1110:15048:7750/235‑1 (MQ=60)
                                                                                                                  caccccccctctCCACGAAGAAACCGATGGTGGCAAGATCGCAAAACGGAAGCACTTGATTACACGGCACACAAACACCAATTAAAATGGTGAGTGGAATAAAAACCAGGCTGGCCGCTAC‑‑CCCCGCCGTATTTCCCAGCAGCAACGCCGGATAAAGGCCAAGCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATC                                                                                                                        <  M01186:133:000000000‑A821B:1:2108:18076:17684/239‑1 (MQ=60)
                                                                                                                                                                           GATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACAC                                                                 >  M01186:133:000000000‑A821B:1:2101:24028:12506/1‑249 (MQ=60)
                                                                                                                                                                                CCCGGCACACAAACAGCAATTAAAATGGGGAGTGGGAAAAAAATCAGGCTTCCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGATCTCTTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGC                                                                                                         <  M01186:133:000000000‑A821B:1:1107:20635:3931/204‑1 (MQ=60)
                                                                                                                                                                                                  ATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCATGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCAGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGAT                                        >  M01186:133:000000000‑A821B:1:1105:26773:9360/1‑251 (MQ=60)
                                                                                                                                                                                                               gagtggaaaaaaaaccaggctgcccgatccCCCCGCCGTATGTCCCGGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATC                              <  M01186:133:000000000‑A821B:1:1101:16722:20404/220‑1 (MQ=60)
                                                                                                                                                                                                                               GCTTGCCGATACCA‑‑CCGCCTTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAAC              <  M01186:133:000000000‑A821B:1:1101:13587:10903/248‑1 (MQ=60)
                                                                                                                                                                                                                                        TACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGCTAATCAGCCCCATCACAAAACCCACGCTGACAG  >  M01186:133:000000000‑A821B:1:1110:7012:15717/1‑251 (MQ=60)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                     
CATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAG  >  NC_000913/2173124‑2173608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑