Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F17 I0 R1
|
98 |
90.7 |
2214160 |
82.3% |
1822253 |
222.7 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTC > NC_000913/2173118‑2173612
|
CCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTA > M01186:129:000000000‑A5M8V:1:2103:21786:7540/1‑251 (MQ=60)
TGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGCTTACCCGGCACACAAACAGCAATTAAACTGGTGAGTGGGATACAAATCAGGCTTGCCGCTACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGG > M01186:129:000000000‑A5M8V:1:1104:4412:20417/1‑251 (MQ=60)
aaaccaaaagtttggcggcgggacccaagggggaaggccaaaaatgaggcccccggaaatgagggttgGGAACAGATTCCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGC < M01186:129:000000000‑A5M8V:1:1103:20796:21164/183‑1 (MQ=60)
AAACCAATGGTTGGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACCCCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGAAATTAAAATGGTGAGTGGGATAAAAACCAGGCTTGCCGATAC‑‑CGCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCC < M01186:129:000000000‑A5M8V:1:1104:17917:10230/251‑1 (MQ=60)
AACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGAAGGTCCCAGACGCAACGCCGGATCCAGGCCA > M01186:129:000000000‑A5M8V:1:2107:26124:7945/1‑251 (MQ=60)
CCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACCAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGGTACCACCC‑‑CCGAATGTCCCAGCAGCAACGCCGGcccaagaccaaa > M01186:129:000000000‑A5M8V:1:1113:21810:16415/1‑239 (MQ=60)
TGGGTCGCGACCCACGGGGTGATGCTAAAAATGATGCCACCCGAGATTAAGGTGCGGAACGGATTCCCCAGATGCCCGGCGACCGCCATCGCCACGAAGAAGCCGATGGGTGAAAGATCGCCAACCGGCGGCACCTGATTACCCGGCACGCAAACAGCAATTAAAATGGTGATTGGTATAAAAATCAGGCTTGCCGATAC‑‑CGCCGCCGTATGTCCCATCAGCAACGCCGGATCAAGGCCAATCAGGAACTC < M01186:129:000000000‑A5M8V:1:1102:18349:1795/251‑1 (MQ=60)
GCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGCTAAAAATCAGGCTTGCCGATACCACCC‑‑CCGTAGTGCCCAGCAGAAACGCCGGGTCAAGGCAAATCAGGAACTCTTGAC > M01186:129:000000000‑A5M8V:1:2102:20911:23464/1‑250 (MQ=60)
ATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAACCAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCCGCAACGCCGGTTCAAGGCCAATCAGGAAATCCTGACCGC > M01186:129:000000000‑A5M8V:1:2104:22814:5128/1‑250 (MQ=60)
ATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAACCAGCAATTAAAATGGTGAGTGGGATAAAAAACAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCCGCAACGCCGGgttacgccccacaaggaatccctaacagc > M01186:129:000000000‑A5M8V:1:2101:15104:8985/1‑221 (MQ=60)
GGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGCCCAATCAGGAATCCCTGACCCCCGAACTT > M01186:129:000000000‑A5M8V:1:1110:15024:12830/1‑250 (MQ=60)
GTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGAATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCCGGAATCCCTGACCGCCGAACTTCG > M01186:129:000000000‑A5M8V:1:2108:11984:18125/1‑250 (MQ=60)
aatgcacaaaaggaagaccccgggaatgagggggggaaacggattcccaggagcccgggccgcccCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAAGGGCAGCACCTGATTACCGGGCACACAAACAGCAATAAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCC < M01186:129:000000000‑A5M8V:1:1108:21745:20208/185‑1 (MQ=60)
GCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTA > M01186:129:000000000‑A5M8V:1:1101:12847:25441/1‑251 (MQ=60)
GCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTA > M01186:129:000000000‑A5M8V:1:1104:19606:9512/1‑251 (MQ=60)
GCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACAA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGCCGCCCGAACTTCGCCCGTA > M01186:129:000000000‑A5M8V:1:1111:14433:18225/1‑251 (MQ=60)
tgggggcagggggatggtaaaaagggacagaaacagtttcccgcgatccacggggcCCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGAACGCCAAACGGCAGCACCTGATTACCCGGCACAAAAACAGCAATTAAAAGGGGGAGTGGGATAAAAACCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAC < M01186:129:000000000‑A5M8V:1:2114:12977:16787/195‑1 (MQ=60)
catatagaggagacccgagattaaggggcagaacgagtttccacgatgccccgaaaccgccctcgccaggaagagccggaggggtgaatacgcgccaaagggcagcacaaaATTACCCGGCACACAAAAAGCAATTAAAATGGGGAGTGGGATAAAAATCAGGCTTACC‑ATTCC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAC < M01186:129:000000000‑A5M8V:1:1101:18315:3580/140‑1 (MQ=60)
TAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGA > M01186:129:000000000‑A5M8V:1:1109:13556:25783/1‑251 (MQ=60)
TAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGAATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTGGCCTTGAAACG > M01186:129:000000000‑A5M8V:1:2107:24046:16467/1‑250 (MQ=60)
TGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGCCGACCGCCATCGCCACGAAGAAGCCGATGGCGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATCCCACCC‑‑CCGTATGTCCCAGCAGCAACGCCGGAACAAGGCCAATAAGGAACTCCTGCCCGCCGAACTTACCCTGTAAACGACAA > M01186:129:000000000‑A5M8V:1:1102:17636:14771/1‑251 (MQ=60)
GATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTA > M01186:129:000000000‑A5M8V:1:1109:20709:15814/1‑250 (MQ=60)
CACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGACCCAGAAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACCAGC > M01186:129:000000000‑A5M8V:1:2114:15168:21834/1‑250 (MQ=60)
CACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGGGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGC > M01186:129:000000000‑A5M8V:1:1101:4796:13052/1‑250 (MQ=60)
CCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTACACGACTACGAGC > M01186:129:000000000‑A5M8V:1:1102:8922:5669/1‑248 (MQ=60)
CCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCT > M01186:129:000000000‑A5M8V:1:2103:25113:7068/1‑250 (MQ=60)
ATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGAAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAG > M01186:129:000000000‑A5M8V:1:1114:15539:20186/1‑250 (MQ=60)
taggggggggaacagattcccgcgaggcaggggcacgcccatccccaaaaaacAGCCGATGGTGGAAATACCGCAAAACGGCAGCCCCTGATTACCCGGCACACAAACAGCAATTAAAAGGGTGAGTGGGATAAAAATCAGGCTGGCCGAT‑‑CCCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGA < M01186:129:000000000‑A5M8V:1:2110:17152:10476/198‑1 (MQ=60)
aagggctgagaaacggtgtccgcctgcccgggcaaccgccatcgccacgaaaaacccgagggggcaaagagcgcaaaacggacgccccagatcacccgagacaaAAACAGCAATTAAAATGGTGAGTGGGATAAAAAACAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCAAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGCAAACGACTACGAGCCTGCTTAGCGA < M01186:129:000000000‑A5M8V:1:1109:27029:14894/147‑1 (MQ=60)
aaaggtcgtgaaagagttccacataggccgggcgcccgcaatccCCACGAAAAAGCCGATGGGGGCAAGTCCACCAAACGGCACCACTTGATTCCCCGGCCCAAAACCAGCAATAAAAAGGGTGAGTGGAAACAAAATCAGCCTTGCCGATAC‑‑CGCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGA < M01186:129:000000000‑A5M8V:1:1101:2629:17113/207‑1 (MQ=60)
GTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCACGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTccaggcctgcttaaggctggg > M01186:129:000000000‑A5M8V:1:2112:23019:9205/1‑230 (MQ=60)
aatcttcccgcgaggcggggccacccCCATCCCCACGAAAAAGCCGATGGGGGAAAGATCGCCAAACGGCAGCCCCTGATTACCGGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC < M01186:129:000000000‑A5M8V:1:1111:9356:14327/225‑1 (MQ=60)
aagattccacagaggccgggccccccccctcgccaagaaaaacccgatgggggaaagaccccaaacCGGCAGCACTTGATTCCCCGGCACAAAAACAGCAATTAAAATGGGGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC < M01186:129:000000000‑A5M8V:1:2113:24820:13598/185‑1 (MQ=60)
AGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCA > M01186:129:000000000‑A5M8V:1:1109:12944:18187/1‑160 (MQ=60)
aaattttcccgggtccagggacaccgcaatcgccacaaaagacccgtaggtggaaagagccacaagcggaagctccgattcaccgggccaaaaaaaagcaattaaaatggatggtgggaaaaaaaccgggctggccgatcccaCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGACCTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC < M01186:129:000000000‑A5M8V:1:1107:27735:21212/108‑1 (MQ=60)
GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGCTAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAACCTGCTTAACGATGGGCGTTAAACCA > M01186:129:000000000‑A5M8V:1:2107:25327:17398/1‑251 (MQ=60)
GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCA > M01186:129:000000000‑A5M8V:1:2109:14380:10364/1‑251 (MQ=60)
tttccccggaggccgggcaccccccagCGCCACGAAGAAGCCGATGGTGGAAAGACCGCCAAACGGCAGCACCTGATTCCCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGAAAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC < M01186:129:000000000‑A5M8V:1:2108:7867:16748/221‑1 (MQ=60)
ATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC > M01186:129:000000000‑A5M8V:1:2106:21586:26996/1‑239 (MQ=60)
ATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTACCGATGGGCGTTCAACCATCCATGATGG > M01186:129:000000000‑A5M8V:1:2101:15556:1860/1‑251 (MQ=60)
ccgggcacccgccacgcgcacgaaaaagccaagggtggaaagtcccccaaccggcaacactTGATTACCCGGCACAAAAACAGAAATTAAATGGGTGAGGGGGATAAAAACCAGGCTTGCCGAT‑‑CCCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTT < M01186:129:000000000‑A5M8V:1:1103:12938:16167/190‑1 (MQ=60)
CGACCGCAAGCGCCACGAAGAAGCCGATGTTGCAAAGATCGCCAAACGGACTCTCATAATTACCCGGCACACAACCAGCAATTAAAAGGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATC < M01186:129:000000000‑A5M8V:1:2106:6506:14602/251‑1 (MQ=60)
cccccccatccccagaaaaaaccggagggtggcaagatggcaaaccggcagcccagaATTACCGGGCACACAAACAGCAATAAAAAGGGGGGGTGGGAAAAAAATCGGGCTGGCGGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCA < M01186:129:000000000‑A5M8V:1:1106:24008:5978/194‑1 (MQ=60)
cacccccccccccaggaagaagccgatggtgcaaaactccCCAAACGGCAGCACCTGATCACCCGGCACAAAAACATCAATAAAAATGGTGAGTGGAAAAAAAACCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATC < M01186:129:000000000‑A5M8V:1:1103:26524:22823/210‑1 (MQ=60)
acccgccaaccCCACGAAAAAGCCGATGGTGGAAAGATCGCCAAACGGCAGCCCCGTATTACCCGGCACAAAAACAGCAATGAAAAGGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATC < M01186:129:000000000‑A5M8V:1:2101:26507:18220/239‑1 (MQ=60)
CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGGAAACGACTACGAGCCTGCTTAGCGATGGACGTTAAACCATCCATGATGGGTTTAATCACCCGTGTCATTAG > M01186:129:000000000‑A5M8V:1:2113:5705:14888/1‑250 (MQ=60)
aggggggaAAGATCCCCAAAGGGCAGCCCCTGATTCCCCGGCACACAAACAGAAATTAAAATGGTGAGTGGGATAAAAATCGGGCTTGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTG < M01186:129:000000000‑A5M8V:1:1108:12678:9964/242‑1 (MQ=60)
GTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCCTGATGGGTTTAATCACCCGTGGCATTACCAGCATACCTGCCG > M01186:129:000000000‑A5M8V:1:1108:4289:10210/1‑250 (MQ=60)
gaaagagcaccaagtggaaccatcgacttccccggcaaaaaaacagaaagtaaatggggtagtgggaaaaaaacaaggcttgccaaaacaCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAGGGCCAATCAGGAACTCCTGACCGCCGAACTGCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCG < M01186:129:000000000‑A5M8V:1:1112:6154:8803/160‑1 (MQ=60)
GCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGCTGGGTTGAATAACCCGGGGCATTAGCAGCATCCCACCCGCCGTTTTTACCGCCAGgttcaaa > M01186:129:000000000‑A5M8V:1:1113:18151:25948/1‑244 (MQ=60)
CCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACA > M01186:129:000000000‑A5M8V:1:2112:11576:22388/1‑251 (MQ=60)
CCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACA > M01186:129:000000000‑A5M8V:1:1106:14161:15895/1‑251 (MQ=60)
CCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATAACTGCCGCCGTTTTTACCGCAAGCTGCAATAC > M01186:129:000000000‑A5M8V:1:2104:24606:25739/1‑250 (MQ=60)
ccttaatcccccgcaacaaaaaaagaattaaaatggggagggggaaaaaaaaccaggctgccagatcccaCCGCCGTATGCCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATAC < M01186:129:000000000‑A5M8V:1:2108:23302:14147/181‑1 (MQ=60)
ccgggccaaaaaaccaaaagtaaaatgtggagtggaataaaaatcaggctgactagtacCCCCGCCGTTTGTCCCCGCAGCAACGCCGGATCAGGGCCAATAAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGCCTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGAC < M01186:129:000000000‑A5M8V:1:2112:20187:18602/192‑1 (MQ=60)
cggcaccacaaacacaataaaaaagggggaggggtaaaaaaaccaggtttgcagatccCCCCGCCGTATGGCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACA < M01186:129:000000000‑A5M8V:1:1104:18034:3953/193‑1 (MQ=60)
ccggaccaaaaacacaaataaaagtggggcggggaaaaaaaatcggtctggccgACCACACCGCCGTATGGCCCAGCAGCAACGACGTATCAAGGCCAAGCAGGAACTCCGGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACA < M01186:129:000000000‑A5M8V:1:1101:16410:24693/197‑1 (MQ=60)
CACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAA > M01186:129:000000000‑A5M8V:1:1107:13989:6558/1‑251 (MQ=60)
CACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAA > M01186:129:000000000‑A5M8V:1:2112:12585:8357/1‑251 (MQ=60)
CACAAACAGAAATTAAAATGGGAGGTGGGAAAAAAATCAGGTTTGCCAATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAA < M01186:129:000000000‑A5M8V:1:1102:13711:14685/251‑1 (MQ=60)
aaaagagaaattaaaaggggtggggggaaaaaaacgcggcgggccgatccCCCCGCCGTATGTCCCAGCAGCAACGCCGGACCAAGGCCAATCAGGAACTCCGGACCGCCGAGCTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACC < M01186:129:000000000‑A5M8V:1:2113:10770:5442/201‑1 (MQ=60)
aaaaggcaattaaatgggggaggggaaaaaaagccagtctggcggaaccCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAGCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCC < M01186:129:000000000‑A5M8V:1:1103:25077:9555/202‑1 (MQ=60)
CAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTCCCGTCTGTTTTACCACCTGCTGCAATACACCTTTGccacactaacccgcg > M01186:129:000000000‑A5M8V:1:1109:26523:24055/1‑236 (MQ=60)
ATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGAT > M01186:129:000000000‑A5M8V:1:2102:21212:21614/1‑251 (MQ=60)
ATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCAGCCG‑TTTTACCGCCAGCTGCAATACCCCTTTGcaatcgtaaacccccaggat > M01186:129:000000000‑A5M8V:1:1105:8508:7564/1‑230 (MQ=60)
gtaggtggaaaaaaatccggcctcgccgtaccCCCCGCCGTATGCCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCCGACCGCCGAACTTCGCCTGTAAACGACTTCGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAA < M01186:129:000000000‑A5M8V:1:1114:12728:25063/218‑1 (MQ=60)
ggaaaaaacacgggttggccagtccCCCCGCCGTATGTCCCAGCGGCAAGGCCGGATCAGGGCCAATCGGGAACTCCTGACCGCCGAGCTTCGGCGGTAAACGACTACGAGCCTGCTTAGCGTTGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACAGCGTAACCCGCGAGGATGCCGATAATCAGCCC < M01186:129:000000000‑A5M8V:1:1108:17685:16093/225‑1 (MQ=60)
aaaaaagcggtcttgccgatccCCCCGCCGTATGTCCCAGCAACAACGGCGGATCAAGGCCAATCAGGACCTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATC < M01186:129:000000000‑A5M8V:1:2107:16701:12983/229‑1 (MQ=60)
aaacccggcttggcagatacCCCCGCCGTATGTCCCAGGAGCAACGCCGGATCAGGGCCAATCAGGAACCCCTGACCACCGAACTGCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCAC < M01186:129:000000000‑A5M8V:1:2114:5877:21423/231‑1 (MQ=60)
GCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGG > M01186:129:000000000‑A5M8V:1:1101:17391:16130/1‑251 (MQ=60)
ccaCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAAC > M01186:129:000000000‑A5M8V:1:1101:12024:22882/4‑237 (MQ=60)
CCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAACCGGGAACCCCTGACCGCCGAATTTCGCCTTTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCCCCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGC < M01186:129:000000000‑A5M8V:1:1102:7864:17831/251‑1 (MQ=60)
CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACCAGCCTGCTTAGCGCTGGGCGTTAAACCATCCATGATAGGTTTAATCACCCGTGGCATTAGCACCATCACTTCCGCCGTTTTTACCGCCGGCTGCAATGCACCTTTGCAATCGTAACCCCCGAGGATCCCGATAActgcgcccttcacaaaaccaacgggccaagcccc > M01186:129:000000000‑A5M8V:1:2107:17230:6194/1‑216 (MQ=60)
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CCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTC > NC_000913/2173118‑2173612
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
