Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F17 I0 R1
|
98 |
120.7 |
2441348 |
95.3% |
2326604 |
231.2 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCG > NC_000913/2173118‑2173613
|
CCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTACGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTA > M01186:133:000000000‑A821B:1:2102:22063:26987/1‑251 (MQ=60)
AACATTAGCCGCCAGTTGGGTGTGAAAACCAATAGTTGGCGTAGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGAGGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTC < M01186:133:000000000‑A821B:1:2106:6777:13393/251‑1 (MQ=60)
GCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGGGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTC > M01186:133:000000000‑A821B:1:1101:19724:16402/1‑250 (MQ=60)
CATTAGCCGCCGGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGCCCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTC < M01186:133:000000000‑A821B:1:1107:23841:25366/249‑1 (MQ=60)
CGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGCTTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCA > M01186:133:000000000‑A821B:1:2114:19793:8505/1‑251 (MQ=60)
ccatgTGGGTGTGCAAACCAATAGTTTGCGTCGCGCTCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTACCACAATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTTATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAATTGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGC < M01186:133:000000000‑A821B:1:2105:11204:18283/243‑1 (MQ=60)
gttgggtggtgaaaacaaaagtttgggtgggcatccccatGGTGATGCTCATAAAGGTGACACCCGAAATTAAGGTGCGGAACAGATTTCCCCGATGCACGGCCACCGCCACCGCCACGAAGAAGCAGATTGTGGCAAAATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGGACCCAAACAGCAATTAAAATTGTGAGGGGGAAAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGC < M01186:133:000000000‑A821B:1:2102:23061:22764/210‑1 (MQ=60)
GGTGCAAAGCAATAGTGGGCGGCGCGATCCGCAGTGTGATGCTCAGAAGGAGGCCACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACTGAATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAAGCAGGCTTGCCTATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATC < M01186:133:000000000‑A821B:1:1113:14741:1760/250‑1 (MQ=60)
GTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGCGGCAAGATCGCCATACGGTAGCACCTGATTA‑‑‑‑CCCGCCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCCTGCCGATACCA‑‑CTGCCGTATGTCCCAGCAGCAACGCCGGATCAA > M01186:133:000000000‑A821B:1:2114:14429:25186/1‑251 (MQ=60)
GTGCAAACCAATAGTTTGCGCCGCGATCCACAGGGTGATGCTCATAATGATGACACACGCGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATAAGGCTTGCAGATAC‑‑ACCCGCCGTATGTCCCAGCAGCAACGCCGGATCAA > M01186:133:000000000‑A821B:1:1109:5555:9272/1‑251 (MQ=60)
CAAACCAATAGTTGGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGC < M01186:133:000000000‑A821B:1:1106:28498:18145/251‑1 (MQ=60)
CAAACCAATAGTTGGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAAATTAAGGTGCGGACCAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGC < M01186:133:000000000‑A821B:1:1102:13668:27319/251‑1 (MQ=60)
AACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCA > M01186:133:000000000‑A821B:1:2107:12450:10866/1‑251 (MQ=60)
AACCAATAGTTTGCGTCGCGATCCACAGGGAGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGAAAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAATGCCGAATCAAGGACA > M01186:133:000000000‑A821B:1:2109:18046:3462/1‑251 (MQ=60)
AAATAGTTTGCGTCGCAATCCACAGGGTGATGCCCATAATGATGACCCCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAACCGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATC < M01186:133:000000000‑A821B:1:1109:23283:12794/251‑1 (MQ=60)
TTTGTGTCGCGATCCACAGGGTGATGCTCAAAATGATGCCACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATAAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAA < M01186:133:000000000‑A821B:1:2102:15363:18535/250‑1 (MQ=60)
CCATAGGGGGATGCTCATAACGATGACACCCGAGATTAAGGAGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGAGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGAAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGATCGCCGA > M01186:133:000000000‑A821B:1:2107:28645:17932/1‑251 (MQ=60)
GGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTT > M01186:133:000000000‑A821B:1:2103:19267:12722/1‑250 (MQ=60)
GTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGCACTTCG > M01186:133:000000000‑A821B:1:2109:12399:3075/1‑250 (MQ=60)
GCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTA > M01186:133:000000000‑A821B:1:2102:19249:10612/1‑251 (MQ=60)
CATAATGATGACACCCGAAATTAAGGGCCAGAACAGATTCCCACGATGCACGGGCGCCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCAAAACGGCAGCCCCTGATTC‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAC < M01186:133:000000000‑A821B:1:2108:11642:27247/251‑1 (MQ=60)
GGATGACACCCGAGATTAAGGTGAGAAAGAGATTCCAAGGATGCCCGGGGACCGCCATCGCCGCGAAGAAGCCGATGGGGGAAAGACCGCAAAACGGCAGCACCTGATTC‑‑‑‑CCCGGCAAACAAGCAGCAATTAAAAGGGTGAGTGGGATAAAAATAAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGAC < M01186:133:000000000‑A821B:1:2111:13866:9939/249‑1 (MQ=60)
ccccgagaATTAAGGTGCGAAACAGATTCCCAGGAGGCCCGGCGACCGCCATCCCCAGGAAGAAGCCGATGGTGGCAAGATCGCCAACCGTCACCACCTAATTA‑‑‑‑CCCGGCACAAAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACAA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCC < M01186:133:000000000‑A821B:1:1112:12965:18452/243‑1 (MQ=60)
ccccgGAGATTAAGGTGCGGACAAGATTTCCAGGAGGCACGGCGCCCGCAATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTAATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATAC‑‑CGCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCC < M01186:133:000000000‑A821B:1:2104:22043:3165/246‑1 (MQ=60)
CCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGC > M01186:133:000000000‑A821B:1:1106:12080:3313/1‑248 (MQ=60)
CCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGC > M01186:133:000000000‑A821B:1:2106:11254:16360/1‑248 (MQ=60)
AGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGACCTTCGCCTGTAAACGACTACGAGCCTGCTTA > M01186:133:000000000‑A821B:1:1112:5393:16001/1‑251 (MQ=60)
AGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTA > M01186:133:000000000‑A821B:1:2104:19786:15050/1‑251 (MQ=60)
AGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTA > M01186:133:000000000‑A821B:1:1104:28491:20614/1‑251 (MQ=60)
tgcctcaacgtcgcgtgggctcggagatgagtaaaagagacaggccacgaagaaacgaATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACCCAACCAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGA < M01186:133:000000000‑A821B:1:1105:16965:23144/193‑1 (MQ=60)
TAAGGTGCGGAACAGATTCCCACGATGCCCGGCGCCCGCCATCCCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAACCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGA < M01186:133:000000000‑A821B:1:1103:25137:11978/251‑1 (MQ=60)
GTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCACCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGG > M01186:133:000000000‑A821B:1:2107:11333:8695/1‑251 (MQ=60)
GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTA > M01186:133:000000000‑A821B:1:2107:13961:11701/1‑251 (MQ=60)
ACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAA > M01186:133:000000000‑A821B:1:2107:7824:13692/1‑251 (MQ=60)
cggattgcccggaggaaaggagcccacaATCGCCACGAAGAAGGCGATGGAGGCAAGATCGCCACACGGCACCAC‑‑‑‑TTATGGCCCCGGCACACAAACATCAATTAAAATTGTGGGGGGGATAAAAATAAGGCTGGAGGATGCCA‑‑CAGCCGTATGGGCAAGCAGCAACGCCGGATAAAGGCCAATCAGGAACTCCTGACCGCAGAACTTCGCCTGTAAACGACTACGAGCCTGATTAGCGATGGGCGTTAAAC < M01186:133:000000000‑A821B:1:2102:16022:23208/223‑1 (MQ=60)
AAGATTCCCACGAGGCCCGGCGCCCGCCACCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTGGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC < M01186:133:000000000‑A821B:1:1108:17787:14874/251‑1 (MQ=60)
ATTTCCACGATGCACGGCGCCCGCCATCGCCACGAAGAAGCCGATGGTGGAAAGACCGCCAAACGGCAGCACCTGATTC‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGGGTGGGATAAAAACCGGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC < M01186:133:000000000‑A821B:1:1106:14686:16514/248‑1 (MQ=60)
ATTCCCACGATGCCCGGCGACCGCCAGCGCCACAAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACAAAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAA < M01186:133:000000000‑A821B:1:1112:21309:11446/247‑1 (MQ=60)
CGATGCACGGCGACCGCCACCGCCACGAAGAAGCCGAGGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGGGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGAT < M01186:133:000000000‑A821B:1:1104:19232:15262/251‑1 (MQ=60)
CGAGGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGAT < M01186:133:000000000‑A821B:1:2110:14358:7894/251‑1 (MQ=60)
CGCCCACCATCGCCACGAAGAAGCCGATGGTGGCAAGATCCCCAAACGCCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACGACAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATC < M01186:133:000000000‑A821B:1:1110:15775:8437/251‑1 (MQ=60)
CGACCGCCATCGCCCCGAAGAAGCCGATGGGGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAAT < M01186:133:000000000‑A821B:1:2102:16639:17194/250‑1 (MQ=60)
cgccgcccatcgccacgaaaaagccaagtgtggaaagagggccaaacggcagcccctaattccccgacacaaaaacagcaataaaaagtgtgagggggaaaaaaagcagcctgcccgctcccaCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATC < M01186:133:000000000‑A821B:1:2113:26869:20524/128‑1 (MQ=60)
CGCCACGAAGAAGCGGATGGTGACAAGACCGCCAAACGGCAGCCCCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAAGGGTGAGTGGAATAAAAATCAGGCTTGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCA < M01186:133:000000000‑A821B:1:2111:23895:24603/251‑1 (MQ=60)
CGAAGAAGCCGATGGTGGAAAGATCGCCAACCGGCAACACCTAATTA‑‑‑‑CCCGGACCCCAAACAGCAATTAAAAGGGGGAGTGGAATAAAAATCAGGCTTCCCGATAC‑‑ACCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGC < M01186:133:000000000‑A821B:1:2108:7384:21371/251‑1 (MQ=60)
GAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTG > M01186:133:000000000‑A821B:1:1106:27579:9805/1‑177 (MQ=60)
AAGAAGCCAGTGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAACCAGCAATTAAAATGGTGAGTGGGATAAAAACCAGGCTGGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGC < M01186:133:000000000‑A821B:1:1108:14695:8388/249‑1 (MQ=60)
gacaaaacgaatggtggcaaggccgaaaaacggccgcaccggatacCCCGGCACACAAACAGAAATAAAAATGTTGAGTGGGATAAAAATCAGCCTCGCCGATAC‑‑CTCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGC < M01186:133:000000000‑A821B:1:1113:12945:20747/204‑1 (MQ=60)
GCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCA > M01186:133:000000000‑A821B:1:1107:9591:7593/1‑251 (MQ=60)
gggggGGCAAGATCGCAAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACATAACCAGCAATAAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTG < M01186:133:000000000‑A821B:1:2107:17468:8374/245‑1 (MQ=60)
GCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATAAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACACGTGGCATTACCAGCATCACTGCCGCCGATTTTACCG > M01186:133:000000000‑A821B:1:2106:27411:12509/1‑251 (MQ=60)
CCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACA > M01186:133:000000000‑A821B:1:2104:23182:21583/1‑251 (MQ=60)
TGATTA‑‑‑‑CCGGGCACAAAAACAGCAATTAAAATGGTGGGTGGGATAAAAATCAGGCGTGCCAATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACC < M01186:133:000000000‑A821B:1:2107:28372:12893/251‑1 (MQ=60)
TGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACAC > M01186:133:000000000‑A821B:1:1101:11867:7550/1‑250 (MQ=60)
ccctaattacccggccaccaaaaagaaaaTAAAATGGTGAGTGGAATAAAAATCGGGCTTGCCAATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAACCCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATAC < M01186:133:000000000‑A821B:1:1109:23069:15405/222‑1 (MQ=60)
GATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAACATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAAAGCCGGATCAACGCCAATCAGGATCACCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTCTAATCACCCGTGACATTAGCAGCATCACTGCCGCCGGTTTTACCGCCAGCTGCAATACAC > M01186:133:000000000‑A821B:1:2102:6688:4656/1‑249 (MQ=60)
ATTC‑‑‑‑CCCGGAACACAAACAGAAATTAAAAGGGGAAGTGGAATAAAAACCAGGTTTCCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTT < M01186:133:000000000‑A821B:1:2101:7310:18046/251‑1 (MQ=60)
ATTA‑‑‑‑CCCGGCACACAAACAGAAATAAAAAGGGGGAGTGGAAAAAAAACCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTT < M01186:133:000000000‑A821B:1:1106:28221:19377/251‑1 (MQ=60)
CAAACGCCAATTAAAATGGTGAGGGGGATAAAACTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCACCGCCGGATAAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGTTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACC < M01186:133:000000000‑A821B:1:2105:26702:7749/251‑1 (MQ=60)
AAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACC > M01186:133:000000000‑A821B:1:2103:24252:15296/1‑250 (MQ=60)
TTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATG > M01186:133:000000000‑A821B:1:2109:10259:13067/1‑251 (MQ=60)
GAGTGGTATAAAATCCGGGCTGGCCGATACCA‑‑CCGCCGTATGGCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGACCTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACCCCTTTGACATCGTAACCCGCGAGGATGCCGATAATC < M01186:133:000000000‑A821B:1:1110:3454:20006/250‑1 (MQ=60)
ggagggggaaaaaaatcagtgttgccaataccaCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAAT < M01186:133:000000000‑A821B:1:2102:16384:10433/217‑1 (MQ=60)
GGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCC > M01186:133:000000000‑A821B:1:2109:18732:9242/1‑250 (MQ=60)
GGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGAAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACACGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGCCATCGTAACCCGCGAGGATGCCGATAATCAGCCC > M01186:133:000000000‑A821B:1:1113:18353:26542/1‑250 (MQ=60)
aaaaccggatttgccaaccccaCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACCCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCAC < M01186:133:000000000‑A821B:1:2112:20727:7577/229‑1 (MQ=60)
GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACC > M01186:133:000000000‑A821B:1:1101:6464:12290/1‑250 (MQ=60)
TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGG > M01186:133:000000000‑A821B:1:1106:3353:18770/1‑251 (MQ=60)
CGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGCGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGA > M01186:133:000000000‑A821B:1:1114:18295:23922/1‑251 (MQ=60)
taccaCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAG > M01186:133:000000000‑A821B:1:1109:27444:19080/6‑251 (MQ=60)
CCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGC < M01186:133:000000000‑A821B:1:2102:21341:5796/251‑1 (MQ=60)
CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCG > M01186:133:000000000‑A821B:1:1103:20919:4631/1‑251 (MQ=60)
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CCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTA‑‑‑‑CCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCG > NC_000913/2173118‑2173613
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
