Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F70 I1 R1
|
17 |
99.6 |
3381834 |
97.7% |
3304051 |
141.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
4,001,645 |
Δ5 bp |
coding (220‑224/951 nt) |
corA → |
magnesium/nickel/cobalt transporter |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
4001645 |
4001649 |
5 |
103 [0] |
[0] 105 |
corA |
magnesium/nickel/cobalt transporter |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4001644 | 0 (0.000) | 103 (1.030) |
82/280 |
0.1 |
100% |
coding (219/951 nt) |
corA |
magnesium/nickel/cobalt transporter |
| ? | NC_000913 |
4001650 = |
0 (0.000) | coding (225/951 nt) |
corA |
magnesium/nickel/cobalt transporter |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCG > NC_000913/4001510‑4001784
|
ATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCTTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTT > NB501016:230:HFVJLAFXY:2:21104:2018:9896/1‑151 (MQ=60)
ATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGCAACTGGAACACATCGAACCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGA > NB501016:230:HFVJLAFXY:4:21412:18005:19788/1‑149 (MQ=60)
TGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGC > NB501016:230:HFVJLAFXY:4:11610:3137:18200/1‑151 (MQ=60)
TGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGC > NB501016:230:HFVJLAFXY:1:21211:11132:19038/1‑151 (MQ=60)
GACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCCGAACTTGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCAC > NB501016:230:HFVJLAFXY:2:21102:4398:7551/1‑151 (MQ=60)
AGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACT < NB501016:230:HFVJLAFXY:3:11610:18993:10476/151‑1 (MQ=60)
CGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTACCTCCACTGTGGC > NB501016:230:HFVJLAFXY:1:11309:18141:20270/1‑151 (MQ=60)
TACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACTTCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCGTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGG < NB501016:230:HFVJLAFXY:2:11208:2761:9594/148‑1 (MQ=60)
TACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCA > NB501016:230:HFVJLAFXY:4:21504:16992:12314/1‑150 (MQ=60)
CAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTT > NB501016:230:HFVJLAFXY:2:11102:7581:18011/1‑151 (MQ=60)
ATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTAC > NB501016:230:HFVJLAFXY:3:21406:22250:16087/1‑151 (MQ=60)
TGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGG > NB501016:230:HFVJLAFXY:2:21312:9963:1214/1‑127 (MQ=60)
TGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCG > NB501016:230:HFVJLAFXY:3:21411:24476:13197/1‑113 (MQ=60)
GAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTAC < NB501016:230:HFVJLAFXY:4:11505:11603:13395/147‑1 (MQ=60)
CTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTG > NB501016:230:HFVJLAFXY:4:11507:16316:16527/1‑151 (MQ=60)
CTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAACATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATACGTGATGGGCGTCTG > NB501016:230:HFVJLAFXY:3:21606:8664:9197/1‑151 (MQ=60)
TGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGT > NB501016:230:HFVJLAFXY:3:11506:19601:7565/1‑151 (MQ=60)
TGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGT > NB501016:230:HFVJLAFXY:4:11408:24866:17032/1‑151 (MQ=60)
GGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTT < NB501016:230:HFVJLAFXY:4:11411:25269:8369/151‑1 (MQ=60)
CAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTT > NB501016:230:HFVJLAFXY:4:21407:10504:10763/1‑150 (MQ=60)
GGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTG < NB501016:230:HFVJLAFXY:3:21612:18046:8798/137‑1 (MQ=60)
GTACTGGATGACATCGAAGCATCGGCACGTTTCTTTGAAGACGCCGACGGCCTGCAT‑‑‑‑‑CTCCTTGTTCTTCTTTGAAGATGCGGAAGATGACGCCGGTAACTCCACTGTGGCATTTACCTTGCGTGTTGGTCGGCTGTTTACTCTGCGTGAG < NB501016:230:HFVJLAFXY:4:11410:2908:2673/151‑1 (MQ=60)
GGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTT < NB501016:230:HFVJLAFXY:2:11211:5187:14454/110‑1 (MQ=60)
AGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACT > NB501016:230:HFVJLAFXY:2:21208:4713:16498/1‑151 (MQ=60)
AGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACT < NB501016:230:HFVJLAFXY:2:21303:18978:11252/151‑1 (MQ=60)
GACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTG > NB501016:230:HFVJLAFXY:1:11104:10906:4396/1‑151 (MQ=60)
CATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCC > NB501016:230:HFVJLAFXY:3:21403:9881:8588/1‑151 (MQ=60)
CATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCC > NB501016:230:HFVJLAFXY:4:21412:3052:15964/1‑151 (MQ=60)
CGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGC < NB501016:230:HFVJLAFXY:2:11303:18953:8882/151‑1 (MQ=60)
CGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTG < NB501016:230:HFVJLAFXY:2:11203:12893:8774/60‑1 (MQ=60)
AAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTT > NB501016:230:HFVJLAFXY:4:21402:25972:4264/1‑151 (MQ=60)
AGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTT > NB501016:230:HFVJLAFXY:1:21204:6486:10031/1‑151 (MQ=60)
GGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTTCCCGCTTTTCGTCT > NB501016:230:HFVJLAFXY:2:21205:16872:2819/1‑151 (MQ=60)
GCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGAGTGAGCGTGAACTGCCCGCTTTTCGTCTT > NB501016:230:HFVJLAFXY:3:21407:8743:4333/1‑151 (MQ=60)
GTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATC > NB501016:230:HFVJLAFXY:3:11511:18116:4770/1‑151 (MQ=60)
GTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATG < NB501016:230:HFVJLAFXY:1:21211:9683:5380/100‑1 (MQ=60)
GTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCC < NB501016:230:HFVJLAFXY:3:11607:10992:1108/94‑1 (MQ=60)
TTTCTTTGAAGACGACGACGGCCTGCA‑‑‑‑‑GCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCG > NB501016:230:HFVJLAFXY:4:21612:4474:1362/1‑151 (MQ=60)
TTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCG < NB501016:230:HFVJLAFXY:2:11109:11928:7700/150‑1 (MQ=60)
CTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCATTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTAT > NB501016:230:HFVJLAFXY:4:21608:17162:4703/1‑151 (MQ=60)
TGAAGACGACGACTGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATAACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGTG > NB501016:230:HFVJLAFXY:1:21110:9916:13761/1‑151 (MQ=60)
TGAAGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTAACATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCG > NB501016:230:HFVJLAFXY:2:11310:26574:4150/1‑151 (MQ=60)
AGACGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACACCGGTAACTACACTGTGGAATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGACCGCTTTTCGTATGTATCGTATGCGTGC > NB501016:230:HFVJLAFXY:4:11603:23591:5278/1‑151 (MQ=60)
CGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCG > NB501016:230:HFVJLAFXY:1:21304:22885:5943/1‑151 (MQ=60)
CGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAG < NB501016:230:HFVJLAFXY:4:21606:22911:5829/104‑1 (MQ=60)
GCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTG < NB501016:230:HFVJLAFXY:4:11612:15974:19215/126‑1 (MQ=60)
CCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCC < NB501016:230:HFVJLAFXY:1:11102:14659:6464/113‑1 (MQ=60)
|
ATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCG > NC_000913/4001510‑4001784
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
